Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A06
         (1167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...    61   2e-09
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    30   3.6  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    30   3.6  
Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
 Frame = +3

Query: 342 LATLKXHNVPYNNHAXQITS-EXFDYYDYIFGMDESNMKDLN---KKAPKGS-KAKLLLF 506
           +  LK + +    H  ++TS + F  +DYIFGMD+ N++DL    +K PK   KA++L+ 
Sbjct: 1   MGALKKYGIKDYQHRARVTSPDDFRKFDYIFGMDDQNIEDLQEIARKVPKTERKAEILML 60

Query: 507 GDFDPQ-GDRIIRDPYYDSDSKGFEK 581
           G  D   G R + DPYY+S SK F++
Sbjct: 61  GVQDVMAGKREVPDPYYESGSKQFDE 86


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 330  DWSALATLKXHNVPYNNHAXQITSEXFDYYDYIFGMDESNMKDLNKKAP 476
            +W  L TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1604 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1651


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 330  DWSALATLKXHNVPYNNHAXQITSEXFDYYDYIFGMDESNMKDLNKKAP 476
            +W  L TL  +NVP NN    +TS+    Y+     D S    ++ K P
Sbjct: 1610 NWKRLNTLAHYNVP-NNAILTLTSKSNSLYNLSILSDRSEKSSVSMKTP 1657


>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 315 VGNPPDWSALATL-KXHNVPYNNHAXQITSEXFDYYDYIFGMDESNMKDLNKKAP 476
           +G   DW  +    +  N  YN       +     +DYI GMDE N + ++   P
Sbjct: 42  IGRVADWIGVDRFYRRGNERYNERVYGSAANAGSQFDYIHGMDEHNFQLVDTSKP 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,925,266
Number of Sequences: 27780
Number of extensions: 314353
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)