Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A05
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    54   5e-08
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    38   0.003
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.55 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.8  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
 Frame = +2

Query: 572 IFIHIIPQGTPYILIPFIVIXETIRNIIRPGTLAVRLTANIIAGHLLITLL-----RRTG 736
           +F   +P GTP  LIP +V+ E +  I R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 737 TN-ISFYXXXXXXXXXXXXXXXESAVAIIQSYVITIL 844
            N I+F                E  +A IQ+YV  IL
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 28/83 (33%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
 Frame = +3

Query: 945  GXGXPLXGG*GAPXGXXPGGGGXXPXXXGGKKGXXGKXGGX--GXXGXPXXXGKXXXXXX 1118
            G G    G  G P G    GG       G   G  G  GG   G  G P   G       
Sbjct: 189  GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248

Query: 1119 GXXXGXGXGGGGGGGXPXXXXGP 1187
            G   G G G GG GG P    GP
Sbjct: 249  GGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 31.5 bits (68), Expect = 0.24
 Identities = 27/81 (33%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
 Frame = +3

Query: 951  GXPLXGG*GAPXGXXPGGGGXXPXXX-GGKKGXXGKXGGXGXXGXPXXXGKXXXXXXGXX 1127
            G    G  G   G  PG GG       GG+    G  GG G  G P           G  
Sbjct: 187  GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFG--GGPGGFEGGPGGFGGGP 244

Query: 1128 XGXGXG-GGGGGGXPXXXXGP 1187
             G G G GG GGG      GP
Sbjct: 245  GGFGGGLGGFGGGPGGFGGGP 265


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = +3

Query: 996  PGGGGXXPXXXGGKKGXXGKXGGXGXXGXPXXXGKXXXXXXGXXXGXGXGGGGGGG 1163
            PG  G      GG+ G  G  GG G  G     G       G   G G   GG GG
Sbjct: 5    PGSRGGRGGSRGGRGGFNGGRGGFG-GGRGGARGGGRGGARGGRGGRGGARGGRGG 59



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 942  RGXGXPLXGG*GAPXGXXPG-GGGXXPXXXGGKKGXXGKXGGXG 1070
            RG      GG G   G   G GGG      GG+ G  G  GG G
Sbjct: 8    RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = +3

Query: 987  GXXPGGGGXXPXXXGGKKGXXGKXGGXGXXGXPXXXGKXXXXXXGXXXGXGXGGGGGGG 1163
            G   G  G      GG+ G  G  GG    G     G       G   G G   GG GG
Sbjct: 9    GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG-GRGGRGGARGGRGGSSGGRGG 66


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 1071 PXXPPXSPXXPFSPPXXXGXPXPP 1000
            P  PP  P  P +PP   G P  P
Sbjct: 444  PAAPPLPPSAPIAPPLPAGMPAAP 467


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 1070 PXPPPFPXXXLFPPPXXGGXPXPP 999
            P P P P     P P  GG P PP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,480
Number of Sequences: 5004
Number of extensions: 33919
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)