Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A04
         (1160 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    24   5.9  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   7.0  

>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 24.2 bits (50), Expect(2) = 5.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 410 LFXLXXPPPPPP 375
           LF +  PPPPPP
Sbjct: 321 LFAVDPPPPPPP 332



 Score = 23.4 bits (48), Expect(2) = 5.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 392 PPPPPPF 372
           PPPPPPF
Sbjct: 328 PPPPPPF 334


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
 Frame = -1

Query: 413 PLFXLXXPPPPPPFXKXKXFFFXXPF-FFPPXXX*FFFFXXHSXPX*CXXPPPPXXXXFF 237
           P+F    PPPPPP      F    P   FPP      F+     P     PPPP     F
Sbjct: 282 PIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPS---FYPSPPPPPPPPPPPPPSFPWPF 338

Query: 236 XFFXXSFP 213
                 FP
Sbjct: 339 PPLAPLFP 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,397
Number of Sequences: 37544
Number of extensions: 407972
Number of successful extensions: 5366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2794
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3538190388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)