Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A04
         (1160 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   1.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   1.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   1.4  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    31   2.1  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    30   3.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect(2) = 1.4
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = -2

Query: 679 PPFFXNFFXGXPPPXXXRXXXPXXGGGVXPPPXXXXXXXXXXXXXXXGYXXXXPPPP 509
           PP       G PPP       P  GG   PPP                     PPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 391 PPPPPP 374
           PPPPPP
Sbjct: 771 PPPPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect(2) = 1.4
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = -2

Query: 679 PPFFXNFFXGXPPPXXXRXXXPXXGGGVXPPPXXXXXXXXXXXXXXXGYXXXXPPPP 509
           PP       G PPP       P  GG   PPP                     PPPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 391 PPPPPP 374
           PPPPPP
Sbjct: 771 PPPPPP 776


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect(2) = 1.4
 Identities = 16/57 (28%), Positives = 16/57 (28%)
 Frame = -2

Query: 679 PPFFXNFFXGXPPPXXXRXXXPXXGGGVXPPPXXXXXXXXXXXXXXXGYXXXXPPPP 509
           PP       G PPP       P  GG   PPP                     PPPP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 391 PPPPPP 374
           PPPPPP
Sbjct: 354 PPPPPP 359


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 18/68 (26%), Positives = 26/68 (38%)
 Frame = +1

Query: 211 RGXXXKKKXKKXXXXGGGGXXHXXGXEXXXKKKNYXXXGGKKXGXXKKKXFXFXKGGGGG 390
           RG       ++    GGGG  +  G         Y   GG++    ++    F  GGGGG
Sbjct: 194 RGGDRYGGDRRGGGGGGGGDRYGGGGGDRYGGDRYGGGGGRRGSPDRRG--GFRSGGGGG 251

Query: 391 GXXKXXRG 414
           G  +   G
Sbjct: 252 GYMRSGGG 259


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 256 GGGGXXHXXGXEXXXKKKNYXXXGGKKXGXXKKKXFXFXKGGGGGG 393
           G  G     G +    K+     GG K    K++   F +GGGGGG
Sbjct: 611 GMPGIDRPPGGDRMGDKQRRGARGGVKERERKRRRDEFQRGGGGGG 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,703,646
Number of Sequences: 27780
Number of extensions: 200811
Number of successful extensions: 1807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)