Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A03
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    33   0.058
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    28   2.2  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   2.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    27   3.8  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   5.0  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    27   6.6  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   8.7  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   8.7  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 33.5 bits (73), Expect = 0.058
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 228 VLP-NPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP 404
           V+P  PVF+ LP +YR     K  Y +  +LV    ++ +S Y + Q  L+  K  +   
Sbjct: 27  VVPIQPVFAPLPPDYR--SLYKKLYGQGAFLVDNP-VEASSPYDFSQPILKFGKLPIKQV 83

Query: 405 VMIVKEQALFEKNLKPEEYINKLQE 479
           +   + Q    KNL   +  N++QE
Sbjct: 84  LRDNESQQKDRKNLPRNQKSNEIQE 108


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 231 ELLNLLKAFCSLN*YTF*LIKSNFQTKNYSHRTR-KFFVQCRY 106
           E L  + A+C+ + +   L+   FQ++  SH+TR K F +C Y
Sbjct: 63  EFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIY 105


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
 Frame = +3

Query: 225 KVLPNPVFSELPQNYRLSE--EQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 398
           ++L  P FS      RL++    + F ++  +    +  +  SL S++Q  +     +  
Sbjct: 95  QLLRQPSFSSSENTDRLADLLRVRRFIYQKAW----KSYENPSLSSHRQYQIPTPIQLAS 150

Query: 399 SPVMIVKEQALFEKNLKPEEY-----INKLQEILYDDVFMTYGEHPRLLDVISQFIGDDI 563
           S  ++ K ++   K L   EY     IN +Q  L   + +   +HP+ +D +++FIG + 
Sbjct: 151 SASLLKKVESFIAKELLLFEYLDGHQINFIQIFLMGLLRVQNIQHPQTIDELAEFIGHEE 210

Query: 564 TAI 572
           ++I
Sbjct: 211 SSI 213


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 188 Y*FKLQNAFK-RFKSST*SSVLRAATELQTVRGTKIILLGEW 310
           Y F+  N  K RF+S+     L+    +QT RGTK++  G W
Sbjct: 308 YIFRGANGQKNRFRSNPNDPKLKHLKFIQTKRGTKLLTSGWW 349


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 759 HGDVPEAGKLYHGILNEETLAPEHARVSLDMAPGDTV-LLHPRLLHGSG 902
           HG  PE  ++    +         ARV LD+ PG +V L+H     G+G
Sbjct: 278 HGKGPEGAEIIQECVGFRPSRKGGARVELDVVPGTSVPLVHDYGASGTG 326


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 384 KGIVDSPVMIVKEQALFEKNLKPEEYINK 470
           K I    ++  K +  F KN++PEEYI K
Sbjct: 33  KRIKQDLILKAKTKKHFYKNVRPEEYIKK 61


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 405 VMIVKEQALFEKNLKPEEYINK-LQEILYDDVFMT 506
           +MI KE +LF+   K +  + K LQ + YD++  T
Sbjct: 236 IMINKESSLFDSQEKIDSQLEKFLQPLKYDEIGST 270


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 434 KKCLFFDNHNRAVNYSFAYLQKALFV 357
           KKCL  D     V+ SF Y++ A FV
Sbjct: 157 KKCLILDLDETLVHSSFKYIEPADFV 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,025,592
Number of Sequences: 5004
Number of extensions: 83488
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)