Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A03
         (1167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936           29   7.1  
08_02_1365 - 26423915-26423953,26424409-26424492,26424543-264245...    29   9.3  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    29   9.3  

>10_02_0146 - 5837734-5837978,5838005-5838196,5838783-5838936
          Length = 196

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 958 ALLAKCTVIAFRWRWVRLGPEPWSRRGCSSTVSPG 854
           A+LA+  V   RWRWV +  E  S R  S  V PG
Sbjct: 12  AVLAEDAVERRRWRWVLVEGEVSSTRKISLDVGPG 46


>08_02_1365 -
           26423915-26423953,26424409-26424492,26424543-26424577,
           26425469-26425697
          Length = 128

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 922 WRWVRLGPEPWSRRGCSSTVSPGAMSRETRACSGASVS 809
           WRW+  G E W   G +   S GA +    AC+   V+
Sbjct: 39  WRWLGFGLEWWLAAGRTRVRSGGAAAGAVAACARQQVA 76


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 360 KQRFLQICKGIVDSPVMIVKEQALFEKNLKPEEYINKLQEI-LYD 491
           + R LQIC GI  SPV +   Q   ++N    E+I+ L+E+ +YD
Sbjct: 339 QMRSLQICSGITASPVQVSTSQV--DQN----EWISSLRELTIYD 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,743,722
Number of Sequences: 37544
Number of extensions: 558467
Number of successful extensions: 1261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)