Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A03
         (1167 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1163|AAF54534.2|  287|Drosophila melanogaster CG14688-P...    65   2e-10
L09700-1|AAA28569.1|  399|Drosophila melanogaster GTP-binding pr...    30   5.3  
AE014296-2779|AAF49429.2|  399|Drosophila melanogaster CG12232-P...    30   5.3  

>AE014297-1163|AAF54534.2|  287|Drosophila melanogaster CG14688-PA
           protein.
          Length = 287

 Score = 65.3 bits (152), Expect = 2e-10
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
 Frame = +3

Query: 576 SMFINKPPGTARH-PPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQDIL 752
           SM+I K PG      PHQD ++    P +  +G W A++     NGCL  I  SHK  + 
Sbjct: 132 SMYIYKNPGVGGEVTPHQDSWFLHTDP-NSAVGFWLALEDCTLQNGCLQFIKGSHKSGVH 190

Query: 753 YPHGDVPEAGKLYHGILNEET-LAPEHARVSLDMAPGDTVLLHPRLLHGSGPNRTQRHRK 929
             +   P+       + +    + P+ +   + ++ G  +L+H  ++H S PNR+Q+ R 
Sbjct: 191 RRYLRNPDKDASELMVYDRAAPIYPQSSFTPMQVSKGTCILIHGNVVHKSEPNRSQKSRH 250

Query: 930 AITVH 944
           A T H
Sbjct: 251 AYTFH 255


>L09700-1|AAA28569.1|  399|Drosophila melanogaster GTP-binding
           protein alpha-subunit protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 ELPQNYRLSEEQKSF--YWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 398
           E P   RL E  K F   W+N +L    LI F + Y   +R ++  K IVD
Sbjct: 257 EDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVD 307


>AE014296-2779|AAF49429.2|  399|Drosophila melanogaster CG12232-PA
           protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 252 ELPQNYRLSEEQKSF--YWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 398
           E P   RL E  K F   W+N +L    LI F + Y   +R ++  K IVD
Sbjct: 257 EDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIRAGKHIVD 307


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,505,972
Number of Sequences: 53049
Number of extensions: 955736
Number of successful extensions: 2111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 6168698508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)