Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A02
         (1174 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.10 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.94 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 883 PXPPPRXRXGGPXXXPPPGKXLXXGXGGXPPP 978
           P PPP    GGP   PPP      G    PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
 Frame = +1

Query: 883  PXPPPRX----RXGGPXXXPPPGKXLXXGXGGXPPPGXGGXAXXXPP 1011
            P PPP          P   PPP   +       PPPG  G     PP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = -3

Query: 1022 PXPXGGXXXAXPPXPG-GGXPPXPXXSXLPGGGXXXGPP 909
            P P        PP P  GG PP P    + G G    PP
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = -3

Query: 1046 PXXXXPPXPXPXGGXXXAXPPXPG--GGXPPXP 954
            P     P P P  G     PP PG  G  PP P
Sbjct: 746  PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 1046 PXXXXPPXPXPXGGXXXAXPPXPGGGXPPXPXXSXLP 936
            P    PP P P  G      P P  G PP P  S  P
Sbjct: 1164 PSVAAPPVPAPSSGIPPV--PKPAAGVPPVPPPSEAP 1198



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
 Frame = -3

Query: 1046 PXXXXPPXPXPXGGXXXAXPPX-------PGGGXPPXPXXSXLP 936
            P    PP P P  G     PP        P  G PP P  S  P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +1

Query: 883  PXPPPRXRXGGPXXXPPPGKXLXXGXGGXPPPGXGGXAXXXPP 1011
            P PPPR    G    PP G+         PPP         PP
Sbjct: 339  PPPPPRSNAAGSIPLPPQGRSAPP----PPPPRSAPSTGRQPP 377


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 989  PPXPGGGXPPXPXXSXLPGGGXXXGPPXL 903
            PP P    PP P    +P G     PP L
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.147    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,226
Number of Sequences: 5004
Number of extensions: 17401
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)