Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P24
         (1167 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160     30   3.1  
07_03_1734 + 29120474-29120705,29120839-29120949,29121854-291219...    29   9.3  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   9.3  

>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
          Length = 306

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 952  GXCSXIYFYVV*XSGRHARFXGPPCHSGGG 1041
            G C  +Y Y V  S R      PPC+SGGG
Sbjct: 250  GGCGRVYGYSV-PSARPPPLLPPPCYSGGG 278


>07_03_1734 +
           29120474-29120705,29120839-29120949,29121854-29121966,
           29122119-29124128
          Length = 821

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 20/76 (26%), Positives = 39/76 (51%)
 Frame = -1

Query: 234 FVTVWSHTSWNTXRE*KRNNLTIIFTPTAVVIRERTMKVLSNVDSMLDTQSFKSSHIITQ 55
           FV      +++  R+  + NL+ +F P +  ++ +  K+L  VD+M D +  +   I T 
Sbjct: 123 FVGNLEDATFSIVRQASKLNLSSVFRPASNEMQWKQEKLLQAVDAMRDIE-LELLRISTN 181

Query: 54  QKRSTIGILRIPYRVD 7
           + + T  I+ +  RVD
Sbjct: 182 RPQWTNLIMAVDSRVD 197


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 217 RPYRYKRFSDVPEGIIN-KLRQRAFHKYPDLEF-YWDPDNKTFL 342
           + Y+Y  F+  P  II  K+      K  D  F YWDPD K ++
Sbjct: 192 KKYQYLLFAAEPYEIIGFKIPSAEIDKSADKFFNYWDPDKKQYI 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,855,091
Number of Sequences: 37544
Number of extensions: 505946
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)