Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P23
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    80   7e-16
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    78   2e-15
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   7.1  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 79.8 bits (188), Expect = 7e-16
 Identities = 36/80 (45%), Positives = 56/80 (70%)
 Frame = +1

Query: 151 QQWSKGKVRXKLNNQVLFDKPTYXQLYKEVPQYKLITPAVVSESLKVRGSLAXXALIELR 330
           ++WSKGKV+ K  +  +FDK    ++ KEVP +K I+ +V+ + +K+ GSLA  A+ +L 
Sbjct: 5   KKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLA 64

Query: 331 EKGLIKQVVQHHGQVIYTRA 390
           E+G+I++V QH  Q IYTRA
Sbjct: 65  ERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 35/79 (44%), Positives = 55/79 (69%)
 Frame = +1

Query: 151 QQWSKGKVRXKLNNQVLFDKPTYXQLYKEVPQYKLITPAVVSESLKVRGSLAXXALIELR 330
           ++WSKGKV+ K  +  +FDK    ++ KEVP +K I+ +V+ + +K+ GSLA  A+ +L 
Sbjct: 5   KKWSKGKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLA 64

Query: 331 EKGLIKQVVQHHGQVIYTR 387
           E+G+I++V QH  Q IYTR
Sbjct: 65  ERGVIQKVDQHSKQAIYTR 83


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 157 WSKGKVRXKLNNQVLFDKPTYXQLYKEVPQYKLI 258
           W+ G+V    +NQ L  KP Y   Y + P  KLI
Sbjct: 424 WTLGQVLLYASNQQLLAKPEYANYYMD-PYGKLI 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,593
Number of Sequences: 5004
Number of extensions: 27249
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)