Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P22
         (1170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...   126   8e-30
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    30   0.71 

>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score =  126 bits (303), Expect = 8e-30
 Identities = 61/146 (41%), Positives = 90/146 (61%)
 Frame = +1

Query: 160 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 339
           K+ S  P   EG+VV GFGRGSKELG PTAN   + ++ L +  + GVY+G+A V    V
Sbjct: 17  KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-V 75

Query: 340 YEMVANIGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQ 519
           + MV ++GW P+Y+NK  S E H++     DFY   +++ ++GY+R E N+  LD LIE 
Sbjct: 76  FPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIED 135

Query: 520 IREDIKNSEQNLKQPSAQSLRNHSFF 597
           I  DI+ +  ++ +PS  S +   FF
Sbjct: 136 IHTDIRVALNSMDRPSYSSYKKDPFF 161


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -3

Query: 463 LEQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQLEPIHNKHLAPNL 284
           L+ + N  HR     CAL  F++T +  G+ D +L + P HI+   Q+       L   +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689

Query: 283 LVKILQLPKD 254
           L  I +  KD
Sbjct: 690 LTNINRYLKD 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,248,115
Number of Sequences: 5004
Number of extensions: 86441
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)