Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P19
         (1245 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   108   3e-22
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    89   3e-16
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    81   6e-14
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    54   6e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   8e-06
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    52   3e-05
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    46   0.002
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.025
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.076
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    37   0.94 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    35   5.0  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  108 bits (259), Expect = 3e-22
 Identities = 67/124 (54%), Positives = 73/124 (58%)
 Frame = +3

Query: 591 RGEAVCVLGALPXPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 770
           R   +C  G +P PRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76

Query: 771 GTVKRPRCWRFXIGSAPLTSITKIDAQVXGGETRQXYKDTRXXPLEXPSCXLLFRPXPXT 950
               RPR  RF IGSAPLTSI K DAQ+ GGETRQ YKD R  PL  PSC LLF P    
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPF--- 130

Query: 951 GIPV 962
           G+PV
Sbjct: 131 GLPV 134


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 88.6 bits (210), Expect = 3e-16
 Identities = 44/60 (73%), Positives = 45/60 (75%)
 Frame = +3

Query: 759 SKRPGTVKRPRCWRFXIGSAPLTSITKIDAQVXGGETRQXYKDTRXXPLEXPSCXLLFRP 938
           SK+  T    R  RF IGSAPLTSITKIDAQV GGETRQ YKDTR  PLE PSC LLFRP
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 81.0 bits (191), Expect = 6e-14
 Identities = 39/54 (72%), Positives = 41/54 (75%)
 Frame = +3

Query: 777 VKRPRCWRFXIGSAPLTSITKIDAQVXGGETRQXYKDTRXXPLEXPSCXLLFRP 938
           V+ PR  RF IGSAPLTSITK DAQ+ GGETRQ YKDTR  PL  PSC LLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 54.4 bits (125), Expect = 6e-06
 Identities = 25/32 (78%), Positives = 25/32 (78%)
 Frame = -2

Query: 767 PFAGLLLTCSFLRYPLILWITVLPPLSELIPL 672
           P    LLTCSF  YPLILWITVLPPLSEL PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 54.0 bits (124), Expect = 8e-06
 Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 567 CXNESANARGEAVCVLGALPXPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 734
           C  + A AR EAV VL ALP  RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 52.0 bits (119), Expect = 3e-05
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +3

Query: 666 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFXIGSAPLTSITK 839
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 840 IDAQVXGGETRQXYKDTRXXPLEXPSCXLLFRP 938
           I  Q    +T+  YK T   PL+ PS  LLF P
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 46.0 bits (104), Expect = 0.002
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +2

Query: 683 AHSKAVIRLSTESGDNAGKNM 745
           AHSKAVIRLSTESGDNAGKNM
Sbjct: 39  AHSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.025
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +1

Query: 370 DPDMIRYIDEXGQTTTRMQ 426
           DPDMIRYIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.076
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 565 SALMNRPTRGERRFAYW 615
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.1 bits (82), Expect = 0.94
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 619 APNTQTASPRALADSLXQ 566
           APNTQTASPRALADSL Q
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 34.7 bits (76), Expect = 5.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 448 EICDAXALFVTIISCNKQVNNNNCXHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 615
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,035,117
Number of Sequences: 1657284
Number of extensions: 12442589
Number of successful extensions: 25215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25212
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 125935332049
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)