Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P18
         (1180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    81   3e-16
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.95 
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    28   2.2  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   6.7  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   8.8  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   8.8  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   8.8  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
 Frame = +2

Query: 236 IVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQA 415
           +++LDGG ST +   +   I    LW++  +  +P  VV  H +FL+   D+I T TYQ 
Sbjct: 1   MLMLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQL 58

Query: 416 SVEGFVEHL-GVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGA 592
               + E + GV  +Q Y   A ++ L      +Y  E+   + N  I L +GS   + A
Sbjct: 59  DASIYDEKVEGVPLKQVY---ANSIGLP-----VYAREHLG-LPNKYIALCLGS---HAA 106

Query: 593 HLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAG------VDLLALETIPCQEEAETL 754
            +    EY   Y   T  E +  +H+ RI+A+  +       +D +A E++P   EAE +
Sbjct: 107 TIPGCMEYKMIYDKPTDFEMLYNFHKNRIEAIQASNPKAFEKIDFIAFESLPHVTEAEVV 166

Query: 755 CDLLREFPG--TKAWLAFSCKDDQSIAHGESFQKVAKKCWELNPDQLVAVGVNCCARSFV 928
           C L+++  G   + W+  +C +  +I   E    +  K   +N D +  +GVNC   S +
Sbjct: 167 CQLIQDMKGWSKRCWITCTCPERSTI---ERVSSIISKILSINHDSIWGIGVNCFHLSLL 223

Query: 929 SNLMK 943
             + K
Sbjct: 224 EPIAK 228


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 473 LIHNLVLSLLPDALRSLPLKLGMYW 399
           L H++++SLLPD +R+L LK   Y+
Sbjct: 214 LYHSMIISLLPDGIRNLFLKAISYF 238


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 640 RGVCITAIVFGTVVKMSSIWSDRTHYEWNV 551
           R  C T++     + +S  W DR HYE  V
Sbjct: 244 RSPCSTSVATSEPILVSKSWEDRLHYEVQV 273


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 738 RKQRHCVIFYGSFRVQRLGLHSVVKTIKV*PMEKV 842
           RK+RH   +  +   Q   + S +  IKV P+EK+
Sbjct: 59  RKKRHTKTYVEALESQLANMESTLAKIKVAPVEKI 93


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 379 GSQKIEMRIDNFVW 338
           GS+ +E+R+DN+VW
Sbjct: 28  GSKNLEVRMDNYVW 41


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 689 VEAGVDLLALETIPCQEEAETLCDLLREFPGTKAWL 796
           +  GV  LALE + CQ +   +  LL EF  T A L
Sbjct: 444 IREGVSNLALEYVVCQRDRYGMV-LLSEFTATSAML 478


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 272 SCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAG 382
           SCH G  +D    +S + +   PN +  + +D L AG
Sbjct: 269 SCHSGGALDLPFTYSTKGVLKEPNMLKESGMDVLHAG 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,450,739
Number of Sequences: 5004
Number of extensions: 93751
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)