Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P18
         (1180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773...   177   1e-44
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632...   165   6e-41
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091...   160   2e-39
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510...   136   2e-32
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153     31   2.3  

>12_02_1048 +
           25675563-25675760,25676995-25677051,25677132-25677331,
           25677412-25677541,25677642-25677845,25678017-25678088,
           25678379-25678546
          Length = 342

 Score =  177 bits (432), Expect = 1e-44
 Identities = 93/235 (39%), Positives = 149/235 (63%), Gaps = 1/235 (0%)
 Frame = +2

Query: 239 VVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQAS 418
           +V+DGG +T+L  +   +   DPLWSA+ + + P+ V   HLD+L AGA++IIT +YQA+
Sbjct: 30  LVMDGGLATELEANGADL--NDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQAT 87

Query: 419 VEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 598
           ++GF E  G +KEQ  +L+A++V++A++AR ++L+E+ D      I L+  S+G YGA+L
Sbjct: 88  IQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQHPI-LVAASIGSYGAYL 145

Query: 599 HDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEAETLCDLLREFP 778
            DGSEY G Y +  ++E ++++H+ R++ L EAG DL+A ETIP + EA+   +LL E  
Sbjct: 146 ADGSEYSGDYGEAGTLEFLKDFHKRRLEVLAEAGPDLIAFETIPNKLEAQAYVELLDECN 205

Query: 779 -GTKAWLAFSCKDDQSIAHGESFQKVAKKCWELNPDQLVAVGVNCCARSFVSNLM 940
               AW +F+ KD   I  G+S  + A         ++ AVG+NC    F+  L+
Sbjct: 206 ISIPAWFSFNSKDGVHIVSGDSLIECATIA--NGCSKVGAVGINCTPPRFIHGLI 258


>03_02_0194 +
           6322499-6322654,6323540-6323596,6323702-6323907,
           6324028-6324157,6324285-6324488,6324599-6324670,
           6324844-6325008
          Length = 329

 Score =  165 bits (401), Expect = 6e-41
 Identities = 93/237 (39%), Positives = 145/237 (61%), Gaps = 3/237 (1%)
 Frame = +2

Query: 242 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 421
           V+DGGF+TQL   +G  I+ DPLWSA  + T P+ +   H+ +L AGAD+II+++YQA++
Sbjct: 17  VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74

Query: 422 EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEE-YRDYVQNDDIPLIVGSVGPYGAHL 598
            GF+   G+  E+   L+ R+++LA +AR  + +   R      +  L+  S+G YGA+L
Sbjct: 75  PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGSYGAYL 133

Query: 599 HDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEAETLCDLLREFP 778
            DGSEY GSY +  + E ++++HR R+Q L  AG DL+A E IP + EA+ L +LL E  
Sbjct: 134 ADGSEYSGSYGEDITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNKMEAQALVELLEEEN 193

Query: 779 -GTKAWLAFSCKDDQSIAHGESFQKVAKKCWELN-PDQLVAVGVNCCARSFVSNLMK 943
               +W+ FS  D +++  GESF   A+    LN  D++  VGVNC    F+  +++
Sbjct: 194 IQVPSWICFSSVDGKNLCSGESF---AECLQFLNASDKVTIVGVNCTPPQFIEGIIR 247


>10_08_0045 + 14407892-14408068,14408759-14408815,14408899-14409125,
            14409271-14409400,14409848-14410051,14410127-14410198,
            14410468-14410608
          Length = 335

 Score =  160 bits (388), Expect = 2e-39
 Identities = 95/267 (35%), Positives = 147/267 (55%), Gaps = 9/267 (3%)
 Frame = +2

Query: 242  VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 421
            V+DGG +T+L  +   + D   LWSAR + T P+ +   HLD+L AGA ++IT +YQA++
Sbjct: 24   VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81

Query: 422  EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLE-------EYRDYVQNDDIP-LIVGSV 577
            +GF+   G ++E+    + R+V+LA +AR +YLE       E +D  +    P LI  SV
Sbjct: 82   QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140

Query: 578  GPYGAHLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEAETLC 757
            G YGA+L DGSEY G Y +  ++E ++ +H  R+Q L EAG D++  ETIP + E +   
Sbjct: 141  GSYGAYLADGSEYSGDYGNEGTLEFLKNFHLRRLQVLAEAGPDVIVFETIPNKIETQAYV 200

Query: 758  DLLREFP-GTKAWLAFSCKDDQSIAHGESFQKVAKKCWELNPDQLVAVGVNCCARSFVSN 934
            +LL E      AW  F+ KD  ++  G+S  + A         ++ AVG+NC    F+  
Sbjct: 201  ELLEECKLRIPAWFGFTSKDGVNVVSGDSLIECASIADSCK--EVAAVGINCTPPRFIHE 258

Query: 935  LMKGXNDDRPQAPXRLWLP*FGRKYNP 1015
            L+      +  +   L  P  G  Y+P
Sbjct: 259  LVLSIR--KVTSKPILIYPNSGESYDP 283


>01_06_0875 -
           32650150-32650350,32650464-32650788,32650872-32651092,
           32651187-32651243,32651333-32651515
          Length = 328

 Score =  136 bits (330), Expect = 2e-32
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 6/189 (3%)
 Frame = +2

Query: 224 EAPHIVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITN 403
           EA    V+DGG +T+L  H   +   D LWSA  + + P+ +   HLD+L AGA++I + 
Sbjct: 20  EAGGCAVVDGGLATELEAHGADL--HDELWSASCLVSAPHLIRKVHLDYLDAGANIITSA 77

Query: 404 TYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRD--YVQNDDIP----LI 565
           +YQA+++GF +  G+++E+   L+ R+V +A++AR ++ E +    Y  +   P    L+
Sbjct: 78  SYQATIQGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136

Query: 566 VGSVGPYGAHLHDGSEYDGSYADTTSIETMREWHRPRIQALVEAGVDLLALETIPCQEEA 745
             S+G YGA+L DGSEY G Y  + + ET++ +HR R+Q L +AG DL+A ETIP + EA
Sbjct: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEA 196

Query: 746 ETLCDLLRE 772
           +   D + E
Sbjct: 197 QASGDPITE 205


>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
          Length = 1112

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 191 RTMTPPSSENTEAPHIVVLDGGFSTQLSCHVGHVID--GDPLWSARFIHTHPNEVVNTHL 364
           +T+   +  NT+ P +VV+  G   QLS +   ++D  G  LW+ +        +++T  
Sbjct: 71  KTLAWYAKTNTQVPELVVVPSGSRLQLSSNGLSLLDPGGHELWNPQVTSAAYANMLDTG- 129

Query: 365 DFLRAGAD 388
           +F+ AGAD
Sbjct: 130 NFVLAGAD 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,578,666
Number of Sequences: 37544
Number of extensions: 633225
Number of successful extensions: 1524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)