Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P17
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    53   9e-08
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   3.0  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    27   6.9  

>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
 Frame = +2

Query: 467 EQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDD 646
           E + S    LA IYE  QN++   + L  +  + G  +  ++  L   +++   YL++  
Sbjct: 92  EYLVSCCLQLATIYEAEQNFELLCSSLEAVE-KHGHFENDLEQLLLLRIRLGDAYLKLGK 150

Query: 647 PVQAEAFVNRASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQ-RYNELSYRNIIHE 823
             +A   V  +  L  + +N+QL +  ++C AR LD   +F+EAA+  Y  L Y+   +E
Sbjct: 151 AEKAILTVRTSIPLAFKVSNDQLLMELQLCNARALDETGQFLEAAKCYYRVLQYKVPGNE 210

Query: 824 DERMTCLRNALICTVLASAGQQRSRMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
                 L +   C +LA       + L  +      +++P YS++ K YL R F G
Sbjct: 211 LIYRENLCSVAQCLLLAIPSPIVLQFLQEISLQPSVREIPFYSLVEK-YLKRKFIG 265


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 26/94 (27%), Positives = 42/94 (44%)
 Frame = +2

Query: 23   FLXLRSIQNHHLCSPQVFICLKSLSLADSHSLLFAQVSPASSAIXMPVNLQSVRQXXSAL 202
            FL   S+ +     P +   L  LS+ DSH  +   VS   S I     +  + Q  SAL
Sbjct: 2953 FLQASSLLSSSNSKPLLTRVLWLLSVDDSHGSVSEVVSSFKSEIPTWNWIPFIPQLLSAL 3012

Query: 203  SNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLK 304
            S+   +H       R +L+++ K+  Q+L   L+
Sbjct: 3013 SHRESIH------ARAILIQIAKTYPQSLHFQLR 3040


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 755 YRRKFIEAAQRYNELSYRNIIHEDERMTCLRN 850
           +RR  +E  QR + LS++N+I  +E    L N
Sbjct: 426 HRRLLLEELQRLSGLSHKNLIRYNESFWYLNN 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,439
Number of Sequences: 5004
Number of extensions: 76556
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)