Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P17
(1214 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100757-1|AAD43021.1| 405|Homo sapiens COP9 complex subunit 4 ... 396 e-110
BC093007-1|AAH93007.1| 406|Homo sapiens COP9 constitutive photo... 396 e-109
BC009292-1|AAH09292.1| 406|Homo sapiens COP9 constitutive photo... 396 e-109
BC004302-1|AAH04302.1| 406|Homo sapiens COP9 constitutive photo... 396 e-109
AK223178-1|BAD96898.1| 406|Homo sapiens COP9 signalosome subuni... 394 e-109
AK001210-1|BAA91555.1| 394|Homo sapiens protein ( Homo sapiens ... 389 e-107
BC065826-1|AAH65826.1| 397|Homo sapiens proteasome (prosome, ma... 49 3e-05
BC019062-1|AAH19062.1| 456|Homo sapiens proteasome (prosome, ma... 49 3e-05
AB003103-1|BAA19749.1| 456|Homo sapiens 26S proteasome subunit ... 49 3e-05
AK222679-1|BAD96399.1| 456|Homo sapiens proteasome 26S non-ATPa... 46 3e-04
DQ120629-1|ABB92415.1| 1185|Homo sapiens KIF4B protein. 31 8.4
>AF100757-1|AAD43021.1| 405|Homo sapiens COP9 complex subunit 4
protein.
Length = 405
Score = 396 bits (975), Expect = e-110
Identities = 195/274 (71%), Positives = 225/274 (82%)
Frame = +2
Query: 170 LQSVRQXXSALSNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVI 349
+ +VRQ + L NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVI
Sbjct: 1 MAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVI 60
Query: 350 SRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWK 529
SRQLLTD THL L D+ ++E+ HF L+ IQPRVISFEEQVASIRQHLA IYE+ ++W+
Sbjct: 61 SRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 120
Query: 530 EAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNE 709
AA VLVGIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNE
Sbjct: 121 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 180
Query: 710 QLQIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQ 889
QLQI+YKVCYARVLDYRRKFIEAAQRYNELSY+ I+HE ER+ L++AL CT+LASAGQQ
Sbjct: 181 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 240
Query: 890 RSRMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
RSRMLATLFKDER QQL AY IL KMYLDRI G
Sbjct: 241 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRG 274
>BC093007-1|AAH93007.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 396 bits (974), Expect = e-109
Identities = 195/272 (71%), Positives = 224/272 (82%)
Frame = +2
Query: 176 SVRQXXSALSNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVISR 355
+VRQ + L NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVISR
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISR 63
Query: 356 QLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEA 535
QLLTD THL L D+ ++E+ HF L+ IQPRVISFEEQVASIRQHLA IYE+ ++W+ A
Sbjct: 64 QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNA 123
Query: 536 ANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQL 715
A VLVGIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQL
Sbjct: 124 AQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQL 183
Query: 716 QIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRS 895
QI+YKVCYARVLDYRRKFIEAAQRYNELSY+ I+HE ER+ L++AL CT+LASAGQQRS
Sbjct: 184 QIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRS 243
Query: 896 RMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
RMLATLFKDER QQL AY IL KMYLDRI G
Sbjct: 244 RMLATLFKDERCQQLAAYGILEKMYLDRIIRG 275
>BC009292-1|AAH09292.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 396 bits (974), Expect = e-109
Identities = 195/272 (71%), Positives = 224/272 (82%)
Frame = +2
Query: 176 SVRQXXSALSNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVISR 355
+VRQ + L NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVISR
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISR 63
Query: 356 QLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEA 535
QLLTD THL L D+ ++E+ HF L+ IQPRVISFEEQVASIRQHLA IYE+ ++W+ A
Sbjct: 64 QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNA 123
Query: 536 ANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQL 715
A VLVGIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQL
Sbjct: 124 AQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQL 183
Query: 716 QIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRS 895
QI+YKVCYARVLDYRRKFIEAAQRYNELSY+ I+HE ER+ L++AL CT+LASAGQQRS
Sbjct: 184 QIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRS 243
Query: 896 RMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
RMLATLFKDER QQL AY IL KMYLDRI G
Sbjct: 244 RMLATLFKDERCQQLAAYGILEKMYLDRIIRG 275
>BC004302-1|AAH04302.1| 406|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 4 (Arabidopsis)
protein.
Length = 406
Score = 396 bits (974), Expect = e-109
Identities = 195/272 (71%), Positives = 224/272 (82%)
Frame = +2
Query: 176 SVRQXXSALSNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVISR 355
+VRQ + L NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVISR
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISR 63
Query: 356 QLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEA 535
QLLTD THL L D+ ++E+ HF L+ IQPRVISFEEQVASIRQHLA IYE+ ++W+ A
Sbjct: 64 QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNA 123
Query: 536 ANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQL 715
A VLVGIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQL
Sbjct: 124 AQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQL 183
Query: 716 QIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRS 895
QI+YKVCYARVLDYRRKFIEAAQRYNELSY+ I+HE ER+ L++AL CT+LASAGQQRS
Sbjct: 184 QIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRS 243
Query: 896 RMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
RMLATLFKDER QQL AY IL KMYLDRI G
Sbjct: 244 RMLATLFKDERCQQLAAYGILEKMYLDRIIRG 275
>AK223178-1|BAD96898.1| 406|Homo sapiens COP9 signalosome subunit 4
variant protein.
Length = 406
Score = 394 bits (970), Expect = e-109
Identities = 194/272 (71%), Positives = 224/272 (82%)
Frame = +2
Query: 176 SVRQXXSALSNSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVISR 355
+VRQ + L NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVISR
Sbjct: 4 AVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISR 63
Query: 356 QLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEA 535
QLLTD THL L D+ ++E+ HF L+ IQPRVISFEEQVASIRQHLA IYE+ ++W+ A
Sbjct: 64 QLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNA 123
Query: 536 ANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQL 715
A VLVGIPLETGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQL
Sbjct: 124 AQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQL 183
Query: 716 QIYYKVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRS 895
QI+YKVCYARVLDYRRKFIEAAQRYNELSY+ I+HE +R+ L++AL CT+LASAGQQRS
Sbjct: 184 QIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESKRLEALKHALHCTILASAGQQRS 243
Query: 896 RMLATLFKDERGQQLPAYSILXKMYLDRIFDG 991
RMLATLFKDER QQL AY IL KMYLDRI G
Sbjct: 244 RMLATLFKDERCQQLAAYGILEKMYLDRIIRG 275
>AK001210-1|BAA91555.1| 394|Homo sapiens protein ( Homo sapiens
cDNA FLJ10348 fis, clone NT2RM2001065. ).
Length = 394
Score = 389 bits (957), Expect = e-107
Identities = 190/262 (72%), Positives = 218/262 (83%)
Frame = +2
Query: 206 NSGGLHKAQAEKXRNVLMELLKSTXQALSXSLKAFIXAXVNENVSLVISRQLLTDVSTHL 385
NS G HK A K R +L + ++ + +LKAF+ A VNENVSLVISRQLLTD THL
Sbjct: 2 NSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHL 61
Query: 386 ALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLE 565
L D+ ++E+ HF L+ IQPRV+SFEEQVASIRQHLA IYE+ ++W+ AA VLVGIPLE
Sbjct: 62 PNLPDSTAKEIYHFTLEKIQPRVVSFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLE 121
Query: 566 TGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAETTNEQLQIYYKVCYAR 745
TGQKQY+VDYKLETYLKIARLYLE DDPVQAEA++NRASLLQ E+TNEQLQI+YKVCYAR
Sbjct: 122 TGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYAR 181
Query: 746 VLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRSRMLATLFKDE 925
VLDYRRKFIEAAQRYNELSY+ I+HE ER+ L++AL CT+LASAGQQRSRMLATLFKDE
Sbjct: 182 VLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDE 241
Query: 926 RGQQLPAYSILXKMYLDRIFDG 991
R QQL AY IL KMYLDRI G
Sbjct: 242 RCQQLAAYGILEKMYLDRIIRG 263
>BC065826-1|AAH65826.1| 397|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 12 protein.
Length = 397
Score = 49.2 bits (112), Expect = 3e-05
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +2
Query: 455 ISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYL 634
I E + A + + LA I E+N + KEAA++L + +ET + ++E L+ RL L
Sbjct: 77 IYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCL 135
Query: 635 EVDDPVQAEAFVNR--ASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRYNELSYR 808
V D ++ + + Q E T E+L++ Y ++ + ++ + Y +
Sbjct: 136 AVKDYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDT 194
Query: 809 NIIH-EDER-MTCLRNALICTVLASAGQQRSRMLATLFKDERGQQLPAYSILXKMY 970
I E E+ L++ ++ +LA ++S ++ + D++ +++P Y L K++
Sbjct: 195 PCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 250
>BC019062-1|AAH19062.1| 456|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 12 protein.
Length = 456
Score = 49.2 bits (112), Expect = 3e-05
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +2
Query: 455 ISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYL 634
I E + A + + LA I E+N + KEAA++L + +ET + ++E L+ RL L
Sbjct: 136 IYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCL 194
Query: 635 EVDDPVQAEAFVNR--ASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRYNELSYR 808
V D ++ + + Q E T E+L++ Y ++ + ++ + Y +
Sbjct: 195 AVKDYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDT 253
Query: 809 NIIH-EDER-MTCLRNALICTVLASAGQQRSRMLATLFKDERGQQLPAYSILXKMY 970
I E E+ L++ ++ +LA ++S ++ + D++ +++P Y L K++
Sbjct: 254 PCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 309
>AB003103-1|BAA19749.1| 456|Homo sapiens 26S proteasome subunit p55
protein.
Length = 456
Score = 49.2 bits (112), Expect = 3e-05
Identities = 41/176 (23%), Positives = 86/176 (48%), Gaps = 4/176 (2%)
Frame = +2
Query: 455 ISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYL 634
I E + A + + LA I E+N + KEAA++L + +ET + ++E L+ RL L
Sbjct: 136 IYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCL 194
Query: 635 EVDDPVQAEAFVNR--ASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRYNELSYR 808
V D ++ + + Q E T E+L++ Y ++ + ++ + Y +
Sbjct: 195 AVKDYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDT 253
Query: 809 NIIH-EDER-MTCLRNALICTVLASAGQQRSRMLATLFKDERGQQLPAYSILXKMY 970
I E E+ L++ ++ +LA ++S ++ + D++ +++P Y L K++
Sbjct: 254 PCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLF 309
>AK222679-1|BAD96399.1| 456|Homo sapiens proteasome 26S non-ATPase
subunit 12 isoform 1 variant protein.
Length = 456
Score = 46.0 bits (104), Expect = 3e-04
Identities = 40/176 (22%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Frame = +2
Query: 455 ISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYL 634
I E + A + + LA I E+N + KEAA++L + +ET + ++E L+ RL L
Sbjct: 136 IYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKE-RVEFILEQMRLCL 194
Query: 635 EVDDPVQAEAFVNR--ASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRYNELSYR 808
V D ++ + + Q E T E+L++ Y ++ + ++ + Y +
Sbjct: 195 AVKDYIRTQIISKKINTKFFQEENT-EKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDT 253
Query: 809 NIIH-EDER-MTCLRNALICTVLASAGQQRSRMLATLFKDERGQQLPAYSILXKMY 970
I E E+ L++ ++ +LA ++S ++ + D++ +++ Y L K++
Sbjct: 254 PCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEISKYKDLLKLF 309
>DQ120629-1|ABB92415.1| 1185|Homo sapiens KIF4B protein.
Length = 1185
Score = 31.1 bits (67), Expect = 8.4
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Frame = +2
Query: 104 DSHSLLFAQVSPASSAIXMPVNLQSVRQXXSALSNSGGL----HKAQAEKXRNVLMELLK 271
+SH+L+ A VSPA S + ++ + N + H A+ + + +L
Sbjct: 304 NSHTLMIACVSPADSNLEETLSTLRYADRARKIKNKPIVNIDPHTAELNHLKQQVQQLQV 363
Query: 272 STXQALSXSLKAFIXAXVNENV-SLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQP 448
QA +L I A +EN+ SL+ Q L + + L+ + + + +I
Sbjct: 364 LLLQAHGGTLPGSINAEPSENLQSLMEKNQSLVEENEKLSRCLSKAAGQTAQMLERIILT 423
Query: 449 RVIS--FEEQVASIRQHLA 499
++ ++ +RQH+A
Sbjct: 424 EQVNEKLNAKLEELRQHVA 442
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,295,944
Number of Sequences: 237096
Number of extensions: 2637143
Number of successful extensions: 5410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5410
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17174423760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -