Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P17
         (1214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9 signal...   144   8e-35
U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   8.8  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>AC024826-18|AAF60803.1|  412|Caenorhabditis elegans Cop-9
           signalosome subunit protein 4 protein.
          Length = 412

 Score =  144 bits (350), Expect = 8e-35
 Identities = 87/265 (32%), Positives = 141/265 (53%), Gaps = 11/265 (4%)
 Frame = +2

Query: 221 HKAQAEKXRNVLMELLKSTXQA---LSXSLKAFIXAXVNENVSLVISRQLLTDVSTHL-- 385
           HKAQ E    +  + L          +  +K        E  S+V+SRQ ++ ++  L  
Sbjct: 21  HKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDN 80

Query: 386 ALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYERNQNWKEAANVLVGIPLE 565
             L     + +S   L +I+ R IS+E+QV  +R  LA +YE+    K+AA  L+ I  +
Sbjct: 81  QHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSD 140

Query: 566 T-----GQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNRASLLQAET-TNEQLQIYY 727
           T     G +      K +  ++I +L L+  +  +AE +VNR S+L  +   N  +QI +
Sbjct: 141 TSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEH 200

Query: 728 KVCYARVLDYRRKFIEAAQRYNELSYRNIIHEDERMTCLRNALICTVLASAGQQRSRMLA 907
           K   ARV D +R+F+EAAQRY ELS    +   +++T L  A++C +LA  G QRSR+L 
Sbjct: 201 KALQARVSDAKRRFVEAAQRYYELSATEQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLT 260

Query: 908 TLFKDERGQQLPAYSILXKMYLDRI 982
            +FKDER  +  ++ ++ KMYL ++
Sbjct: 261 LIFKDERAPKCASFELIAKMYLTKV 285


>U58726-1|AAB00575.2|  215|Caenorhabditis elegans Hypothetical
           protein T01C8.3 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 447 GCITSSAKCETSCETLSASSAKCVLTSVKSCLEITRL 337
           GC TS       C T S  S  C+  S   C E+T +
Sbjct: 7   GCFTSPTDLPLGCSTNSRGSIFCICNSTDYCNEMTNV 43


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 432 SAKCETSCETLSASSAKCVLTSVKSC 355
           +A C+ SC++  +S+A+CV   + SC
Sbjct: 338 AAACQPSCQSSCSSNAQCVQACLPSC 363


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 489 CLILATCSSNEITLGCITSSAKCETSCETLSASSAKC 379
           CL+    S+N     C      CE  CE LS  + +C
Sbjct: 11  CLVTIAGSTNVFQGSCAAEHVLCEQLCEALSPETYEC 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,269,774
Number of Sequences: 27780
Number of extensions: 437652
Number of successful extensions: 1339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3349461018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)