Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P16
         (1210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...   154   2e-38
SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    30   0.56 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   9.1  

>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score =  154 bits (374), Expect = 2e-38
 Identities = 73/98 (74%), Positives = 90/98 (91%)
 Frame = +1

Query: 214 DKXKXXHKXKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYN 393
           DK +  ++ KE+Y+ YIYKVLKQVHPDTGIS++AM I+NSFVNDIFERIA EAS+LA YN
Sbjct: 26  DKKRGKNR-KETYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYN 84

Query: 394 KRSTITSREVQTSVRLLLPGELAKHAVSEGTKAVTKYT 507
           K+STI+SRE+QT+VRL+LPGELAKHAV+EGTK+VTKY+
Sbjct: 85  KKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTKYS 122


>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 262 IYKVLKQVHPDTG-ISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREVQTSVR 438
           + +++K   P+   IS +A   +   V++    +  EAS      KR TIT  +V  ++ 
Sbjct: 17  VARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDVLLALN 76

Query: 439 LL 444
            L
Sbjct: 77  TL 78


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +3

Query: 282 GPSRHRYFE*SHVDHEFVRERHLRTYRCRSFSSRPLQQAF 401
           GPSR+ Y+  S+ +  +    +  +Y     S++PL Q++
Sbjct: 94  GPSRYGYYPQSYANQSYTYGNNFGSYPPTQPSTQPLPQSY 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,207
Number of Sequences: 5004
Number of extensions: 55052
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)