Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P15
(1208 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 37 0.028
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 35 0.11
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 33 0.60
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 31 1.8
06_03_1279 - 28927462-28927640,28927803-28927908 30 3.2
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 29 5.5
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 29 7.3
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 37.1 bits (82), Expect = 0.028
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +2
Query: 704 TTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKXPA 883
+ G V F+ C CQ+L +WE LK VA +DA A A+ + + P
Sbjct: 46 SNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVATVAALDAD-AHKELAQEYGIRGFPT 104
Query: 884 FLLFRLGK 907
+F GK
Sbjct: 105 IKVFVPGK 112
Score = 35.1 bits (77), Expect = 0.11
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 617 GFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHAVWESVGATL 796
G EK + A EL + F+ L + W V F+ C C++L W+ L
Sbjct: 157 GSSEKTEPSASIELNSQNFDKLVTKSKDL----WIVEFFAPWCGHCKKLAPEWKKAAKNL 212
Query: 797 KSRINVARID 826
K ++ + +D
Sbjct: 213 KGQVKLGHVD 222
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 35.1 bits (77), Expect = 0.11
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 716 WFVMFYGAACVECQRLHAVWESVGATLK--SRINVARIDASLAGVNTAKRFHVGKXPAFL 889
WFV F C C+ L +WE +G ++ I + ++D ++ + + P F
Sbjct: 61 WFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVDCGVS-KPVCSKVDIHSYPTFK 119
Query: 890 LFRLG-KVYRYDLPK 931
+F G +V +Y P+
Sbjct: 120 VFYEGEEVAKYKGPR 134
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 32.7 bits (71), Expect = 0.60
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 12/183 (6%)
Frame = +2
Query: 392 IVLFTKQNCETCKKLEQHVESLQEDFKKHLNAMSVKT-VNSH--LARLYNPSKEPALIFY 562
+V F C CKKL E L FKK + + K + H + Y S P + ++
Sbjct: 51 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWF 110
Query: 563 RHG--VALLYSGEADENEIYGFFEKNQTPAVK-ELTDKIFEHLTQAATGAT----TGDWF 721
G Y G+ + + VK LT + T D
Sbjct: 111 PKGSLEPKKYEGQRTAEALAEYVNSEAATNVKIAAVPSSVVVLTPETFDSVVLDETKDVL 170
Query: 722 VMFYGAACVECQRLHAVWESVGATLK--SRINVARIDASLAGVNTAKRFHVGKXPAFLLF 895
V FY C C+ L ++E + + K + +A +DA A+++ V P F
Sbjct: 171 VEFYAPWCGHCKHLAPIYEKLASVYKQDEGVVIANLDAD-KHTALAEKYGVSGFPTLKFF 229
Query: 896 RLG 904
G
Sbjct: 230 PKG 232
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 31.1 bits (67), Expect = 1.8
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Frame = +2
Query: 389 LIVLFTKQNCETCKKLEQHVESLQEDFKKHLNAMSVKTV------NSHLARLYNPSKEPA 550
++V F C CKKL E ++ KH + + V N LA Y P
Sbjct: 60 MVVEFYAPWCGHCKKLAPEYEKAAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPT 119
Query: 551 L-IFYRHGVALL-YSGEADENEIYGFFEKNQTPAVKEL 658
L IF G + Y G + I + +K PA KE+
Sbjct: 120 LKIFRNQGKNIQEYKGPREAEGIVEYLKKQVGPASKEI 157
>06_03_1279 - 28927462-28927640,28927803-28927908
Length = 94
Score = 30.3 bits (65), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 891 CFAWAKCTDMTCQK*CE 941
CF W CT+ +CQK C+
Sbjct: 45 CFTWLNCTNASCQKECK 61
>03_02_0990 - 13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 29.5 bits (63), Expect = 5.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 1092 NPWGXGVYEXXCYSPFQHFTPHSPHHQW 1009
NPW + S F ++ PHS +H W
Sbjct: 143 NPWSTQQTKPAVRSDFNNYPPHSSNHHW 170
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 29.1 bits (62), Expect = 7.3
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = +2
Query: 353 DELLELIXXKXKLIVL-FTKQNCETCKKLEQHVESLQEDFKKHLNAMSVK---TVNSHLA 520
D L E++ K ++L F C C+KL +E + K + + K T N +
Sbjct: 378 DNLREVVFNSGKNVLLEFYAPWCGHCQKLAPILEEVAVSLKDDEDVVIAKMDGTAND-VP 436
Query: 521 RLYNPSKEPALIFYRHGVALL-YSGEADENEIYGFFEKNQTPAVKELT 661
+ P++ FY G LL Y G E EI F KN+ E T
Sbjct: 437 SDFAVEGYPSMYFYSSGGNLLPYDGRTAE-EIIDFITKNKGSRPGEAT 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,131,178
Number of Sequences: 37544
Number of extensions: 393703
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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