Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P14
(1201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 49 1e-06
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 33 0.060
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.079
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 31 0.42
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.97
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 29 1.7
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 28 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.2
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 24 8.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 26 9.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 9.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 9.0
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Frame = +1
Query: 319 GDCVLLRASVARAQPFVARVASLWENPDDGEMMVSLVWYYRPEHTKLGRQPEDAPDEVF- 495
GD VL+R ++P V+++ +W++ DD V++ WY RPE T +EVF
Sbjct: 356 GDWVLIRNPADSSKPIVSQIYRIWKSDDDINY-VTVCWYLRPEQTVHRADAVFYENEVFK 414
Query: 496 ASKHRDANSVACIEDKCYVLNFKEYSRYRKR 588
S +RD + V+ I +C+V+ Y R R +
Sbjct: 415 TSLYRD-HPVSEIVGRCFVMYITRYIRGRPK 444
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 33.5 bits (73), Expect = 0.060
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +1
Query: 364 FVARVASLWENPDD---GEMMVSLVWYYRPEHTKLGRQPEDA-PD----EVFASKHRDAN 519
++ + L+E D G+ V +WY R ++ +PE PD EV+ S RD N
Sbjct: 80 YLGVICKLYEKAIDKHSGKKYVEAIWYSRAYAKRMEIKPEYLLPDRHINEVYVSCGRDEN 139
Query: 520 SVACIEDKCYVLNFKEY 570
+CI + C V + E+
Sbjct: 140 LTSCIIEHCNVYSEAEF 156
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.079
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 347 SLELSRSSPGLPASGKIPMTVR*WCPLYGTIVRNTRSSVGSRKTHRTKCSLRSTETPTPS 526
S L +S S IP T P+ T+ + SS + + S ++ +P PS
Sbjct: 275 SSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPS 334
Query: 527 LASKTSATCSTLKSIPDTGS 586
TS +C+T SIP TG+
Sbjct: 335 ----TSTSCTTSTSIPPTGN 350
Score = 33.1 bits (72), Expect = 0.079
Identities = 28/83 (33%), Positives = 36/83 (43%)
Frame = +2
Query: 338 GPPSLELSRSSPGLPASGKIPMTVR*WCPLYGTIVRNTRSSVGSRKTHRTKCSLRSTETP 517
G S L +S S IP T P+ T+ +S S T S ST T
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTV---PPTSTSSTSTPPPPASTSSTGTS 382
Query: 518 TPSLASKTSATCSTLKSIPDTGS 586
+ L S TS +C+T SIP TG+
Sbjct: 383 SSPLLS-TSTSCTTSTSIPPTGN 404
Score = 30.3 bits (65), Expect = 0.56
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +2
Query: 341 PPSLELSRSSPGLPASGKIPMTVR*WCPLYGTIVRNTRSSVGSRKTHRTKCSLRSTETPT 520
PP+ S S+P PAS T PL T T +S T + + T PT
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSS--SPLLSTSTSCT-TSTSIPPTGNSTTPVTPTVPPT 416
Query: 521 PSLASKTSATCSTLKSIPDTGS 586
S T+ C+T S+P T +
Sbjct: 417 SSSTPLTTTNCTTSTSVPYTST 438
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 494 SLRSTETPTPSLASKTSATCSTLKSIPDTGS 586
S ST+T + L + TS +C+T SIP TG+
Sbjct: 267 STSSTDTNSSPLPT-TSTSCTTSTSIPPTGN 296
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 30.7 bits (66), Expect = 0.42
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 298 SGDSVARGDCVLLRASVARAQPF-VARVASLWEN-PDDGEMM---VSLVWYYRPEHTKLG 462
+G+ + D VL+ + +PF +AR+ S ++ P + V L WY+RP +
Sbjct: 101 NGELIQPNDFVLVNSPFP-GEPFQIARIISFEKSRPCVSTNLYDSVRLNWYFRPRDIQ-- 157
Query: 463 RQPEDAPDEVFASKHRDANSVACIEDKCYV 552
R D +FAS H D ++ +++KC V
Sbjct: 158 RHLTDTR-LLFASMHSDIYNIGSVQEKCTV 186
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 610 VPARPSIVPPIPSSEAVAACVPNDAKLPPAVSPEL 714
VPA S +PP+P A VP ++ PP P +
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSV 1205
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 610 VPARPSIVPPIPSSEAVAACVPNDAKLPPAVSPEL 714
VPA PS PP+P A VP + PP P +
Sbjct: 1114 VPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 622 PSIVPPIPSSEAVAACVPNDAKLPPAVSPEL 714
PS PP+P A VP + PP P +
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +1
Query: 604 AGVPA--RPSIVPPIPSSEAVAACVPNDAKLPPAVSP 708
AGVP PS PP+P VP + PP +P
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.7 bits (61), Expect = 1.7
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 439 RPEHTKLGRQPEDAPDEVFASKHRDANS-VACIEDKCYVLN-FKEYSR--YRKRLKAIEA 606
R E TKLGRQ + P + SK A+S C+E+ +++ E S YR + K +EA
Sbjct: 824 RGELTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEA 883
Query: 607 GVPARPSIVPP 639
AR + P
Sbjct: 884 D-KARANFTQP 893
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 434 TIVRNTRSSVGSRKTHRTKCSLRSTETPTPSLASKTSATCSTLKSIPDTGSG*RQ*RRVS 613
+++ ++ RT+ S T + T S +S +S + + + P TG +Q V
Sbjct: 445 SLLEQLADALNDSTARRTQSSPSGTNSST-STSSTSSKHSTGISTEPTTGEENKQDGSVG 503
Query: 614 PLGRRSFRRYH 646
+R+FRR H
Sbjct: 504 GFFKRAFRRLH 514
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 613 PARPSIVPPIPSS--EAVAACVPNDAKLPPAVSP 708
P RPSI PP P+S + P + LPP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 604 AGVPARPSIVPPIPSSEAVAACVPNDAKLPPAVSPEL 714
A P PS PPIPSS A K PP+ +P L
Sbjct: 155 ASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS-APSL 190
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 595 AIEAGVPARPSIVPPIPSSEAVAACVPNDAKLPPA 699
++ G PA P + P P + + A +P LPPA
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 23.8 bits (49), Expect(2) = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 613 PARPSIVPPIPSSEAVAACVPNDAKLPPAVS 705
P++P+I P +PS A N + L PA+S
Sbjct: 185 PSQPAI-PIVPSEMAAQVTRENISSLDPAIS 214
Score = 20.6 bits (41), Expect(2) = 8.4
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +1
Query: 610 VPARPSIVPP 639
VP +P+I+PP
Sbjct: 139 VPEKPAIIPP 148
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 422 PLYGTIVRNTRSSVGSRKTHRTKCSLRSTET 514
P +I+RN RSS SR + C L+ ++T
Sbjct: 219 PSLVSIIRNARSSEQSRIAANSSCLLKGSDT 249
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 259 LVASRCRLWIYSFLRPNSNHYSTVVAL----WVRNLVM 158
L SRCR +Y+ L PN + T + WVR++ +
Sbjct: 591 LERSRCRNTLYNILHPNPTYRLTAKQIMKSEWVRSITL 628
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 589 LKAIEAGVPARPSIVPPIPSS 651
L +I A +P PSI+PP+ S+
Sbjct: 260 LSSIAASLPLSPSIIPPLVSA 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,012,668
Number of Sequences: 5004
Number of extensions: 80956
Number of successful extensions: 383
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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