Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P13
(1221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.061
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.99
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 7.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.061
Identities = 21/66 (31%), Positives = 21/66 (31%)
Frame = +2
Query: 875 PPRXXKXXXXXXPPXGXGGPFXKXPRXXFPXPGGXPPPPXGGXXXXPPXXPPXGXPXGXX 1054
PPR PP G P PR P G PPP P PP P G
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSA-PSTGRQPPPLSSSRAVSNPPAPPPAIP-GRS 399
Query: 1055 XXXXPP 1072
PP
Sbjct: 400 APALPP 405
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.99
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 968 PGGXPPPPXGGXXXXPPXXPPXGXPXG 1048
P G PPPP PP PP P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/77 (25%), Positives = 20/77 (25%), Gaps = 2/77 (2%)
Frame = +2
Query: 962 PXPGGXPPPPXGGXXXXPPXXPPXGXPXGXXXXXXPPGXKKXF--PPGXXPXXXKXXXXX 1135
P P G PP P P P P PP K PP P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 1136 GXXGGPQXXXXGXPPPP 1186
P G PP P
Sbjct: 1146 SVAAPPVPAPSGAPPVP 1162
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 601 FWGGGXGXPPPXGGXXXXPXXGGXPXKKIXXKGXXXGPXPXXGXXGG 741
F GG G PP GG GG G GP G GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 595 GXGFXXGGGGGGPXXXXPXPXGGGGF 518
G GF GG GGG P P G GGF
Sbjct: 187 GGGF--GGFGGGSGGPPPGPGGFGGF 210
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -3
Query: 631 GGXNPXPPPKTXGXGFXXGGGGGGPXXXXPXPXGGG 524
GG + PPP G G G GG G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = -1
Query: 1098 PGGKXFFXPGGXXXXXXPXGXPXGGXXGGXXXXPPXGGGGXPPGXGXXXRGXFXXGPPXP 919
PGG F G GG GG P GG G PG G F GP
Sbjct: 204 PGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--GGFGGGPGGFGGGLGGFGGGPGGF 261
Query: 918 XGG 910
GG
Sbjct: 262 GGG 264
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 1107 GXXPGGKXFFXPGGXXXXXXPXGXPXGGXXGGXXXXPPXGGGGXPPGXG 961
G PGG PGG G GG GG P G GG P G G
Sbjct: 227 GGGPGGFEG-GPGGFGGGPGGFGGGLGGFGGG-----PGGFGGGPGGHG 269
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 595 GXGFXXGGGGGGPXXXXPXPXGGGG 521
G G GG GGGP P G GG
Sbjct: 246 GFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +2
Query: 914 PXGXGGPFXKXPRXXFPXPGGXPPPPXGGXXXXPPXXPPXGXP 1042
P P P P P PP P G PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Frame = +2
Query: 962 PXPGGXPPPPX----GGXXXXPPXXPPXGXPXGXXXXXXP 1069
P GG PPPP G PP PP G P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 962 PXPGGXPPPPXGGXXXXPPXXPPXGXPXGXXXXXXPP 1072
P P P PP PP PP G PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.157 0.552
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,277
Number of Sequences: 5004
Number of extensions: 30935
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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