Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P09
         (1187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    60   4e-10
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    43   1e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    30   0.55 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    28   2.9  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   2.9  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.9  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   5.1  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 8/142 (5%)
 Frame = +3

Query: 528 KKNTILDDES----PIFCEISCIKIQSVQTNI---KFVLPNSTAASTGEICLIVPDMKKG 686
           KK  +L+DE     P++ +++ +K       +   K  + N    S+ E CLIV D ++ 
Sbjct: 38  KKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRV 97

Query: 687 RRFDHEPTIDHWEELLRKSGVTQVKT-ILPLRQVKVEYDQFELKRKLLXQHDFIMVDTRI 863
                      +++L+ ++G+++V T ++ L ++K +++ +E KR+L  Q D  + D R+
Sbjct: 98  -----------YKDLVNEAGLSKVVTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRV 146

Query: 864 LSHASHLLGKMFFKKHNMLIPV 929
           +     +LGK F++K  + +PV
Sbjct: 147 IPMLPRILGKTFYQKSKVPVPV 168


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
 Frame = +3

Query: 582 IKIQSVQTNIKFVLPNSTAASTGEICLIVPDMKKGRRFDHEPTIDHWEELLRKSGVTQVK 761
           ++ +S++   K  LP+     T + CLIV D ++            +++L+ + G+ +V 
Sbjct: 55  VEKESLRRPSKVFLPHRIMHVT-DACLIVKDSQQT-----------YQDLVEQQGLDEVI 102

Query: 762 T-ILPLRQVKVEYDQFELKRKLLXQHDFIMVDTRILSHASHLLGKMFFKKHNMLIPVDCM 938
           T +L + ++K++Y     K +L   H+  +VD R+L +   L+GK+F +K     P+  +
Sbjct: 103 TKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVL 162


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 YNKXYVVKDDIYWNFKELRPVSNCY 174
           Y K Y+ KD  Y  F   R  SNCY
Sbjct: 303 YEKIYMNKDGFYITFNNYREASNCY 327


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 720 WEELLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLXQHDFIMVDTRILSHA 875
           WE  L+KS      + +  +Q + E D FE+K+      + ++V++R   HA
Sbjct: 445 WENPLQKSSDDDASSTVS-QQTETEMDSFEVKKDGTSGPNHLVVESRSHQHA 495


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 789 VEYDQFELKRKLLXQHDFIMVDTRILSHASHLL 887
           +EY  +EL+ KL+  HD + + T ++  ++  L
Sbjct: 749 LEYGNYELETKLIEMHDRVEMQTNVIEASASAL 781


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 480 VNSCLTAILQLSILHKKKNTILDDESPIFCEIS-CIKIQSVQTN 608
           + SCL    Q +ILH+      +  S +F E + C  I+ +++N
Sbjct: 1   MGSCLRFFKQGAILHENNTNFTERSSSVFFECNPCYSIEKLKSN 44


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 771 PLRQVKVEYDQFELKRKLLXQHDFIMVDTRILSHASHLLGKMFFKK 908
           PL + + E  +F     LL + D + ++  + +H  H++GK  F+K
Sbjct: 189 PLPEEEAEGAEFVSFDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQK 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,866,032
Number of Sequences: 5004
Number of extensions: 73229
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)