Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P08
         (1196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    99   6e-22
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    77   4e-15
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    53   9e-08
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    29   1.3  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    28   2.2  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    28   3.0  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score =   99 bits (238), Expect = 6e-22
 Identities = 76/236 (32%), Positives = 103/236 (43%), Gaps = 13/236 (5%)
 Frame = +1

Query: 238 LKKPSKRQPARLRYKIEKKVKXHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDILXX 411
           LKK SKR+  RLR +IEKK     RKQ+             P    IPN  P+K+ IL  
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAE 63

Query: 412 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTNLNTLVTNAQARGK------VHE 573
                                                 ++ +   AQA         V E
Sbjct: 64  IEEQKRIREEEKLARRASGQVDAAMEEEDAVDENGSLMISKIAEAAQASNPDDEEEFVME 123

Query: 574 AFN-GDSQPSQDIE-FGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQV 747
             N G++    D E +    K + S K Y +EFKKV+  ++VIL ++DARDP GTR   V
Sbjct: 124 EDNLGEAPLLVDSESYEASVKADTSRKAYDKEFKKVVEASDVILYVLDARDPEGTRSKDV 183

Query: 748 EEAVRESG---KRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNL 906
           E  V  S    KRL+ V+NK DLVP + L  W+ YLR   P +P ++++     NL
Sbjct: 184 ERQVLASSAEEKRLIFVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSASGSGNSNL 239


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = +1

Query: 646 KTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRD 819
           K  + E  KVI  ++V+++++DARDP+GTRC  VE  +R   S K ++LVLNK DLVP  
Sbjct: 204 KRIWNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVPTS 263

Query: 820 NLTAWLKYLRQSAPAVPFKAS 882
              AW+K L +  P + F AS
Sbjct: 264 VAAAWVKILAKEYPTIAFHAS 284



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 1044 GTPNVGKSXIINSXXRSKLV-XGXXPGST 1127
            G PN GKS IIN+  + K+      PG T
Sbjct: 317  GFPNAGKSSIINTLRKKKVCNVAPIPGET 345


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = +1

Query: 601 QDIEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESG--K 774
           QD+E       E +L+ + R+  +VI  ++V+++IVDAR+PL  R   +E+ V+E G  K
Sbjct: 144 QDVEGFIVTPFERNLEIW-RQLWRVIERSDVVVQIVDARNPLFFRSAHLEQYVKEVGPSK 202

Query: 775 RLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPF 873
           +  L++NKAD++  +    W  Y  ++   +PF
Sbjct: 203 KNFLLVNKADMLTEEQRNYWSSYFNEN--NIPF 233



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 1044 GTPNVGKSXIINSXXRSKLV-XGXXPGST 1127
            G PNVGKS  IN+   SK V     PG T
Sbjct: 308  GYPNVGKSSTINALVGSKKVSVSSTPGKT 336


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 562 KVHEAF-NGDSQPSQDIEFGKDRKQENSLKTYYREFKKVISEAEVILEI 705
           K+ E   N D    QD +F K  + ++ L++Y    +  ISE  V++++
Sbjct: 517 KIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKL 565


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 811 PRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLG 909
           PR NL A LKYLR++ P +PF  +T  Q+ ++G
Sbjct: 41  PR-NLRA-LKYLRENYPQLPFVLATGRQRTSVG 71


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 819 QSDSMVKVFKTVCTSSSIQGLYSGSTTQSWKEKDEAYSXRERNE 950
           +SD M  +F T  +SSS   L+     ++ +E+ ++    E NE
Sbjct: 294 ESDDMRSLFGTPASSSSYDALFDEEVEKAIEEETKSVQANEENE 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,676,998
Number of Sequences: 5004
Number of extensions: 63112
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)