Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P08
(1196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 128 1e-29
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 73 6e-13
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 54 3e-07
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 51 2e-06
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 42 0.001
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 40 0.004
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 36 0.083
09_02_0104 - 4329068-4329926,4330967-4331811 31 2.4
03_05_0201 + 21924279-21925205,21925700-21926320 30 4.1
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 128 bits (308), Expect = 1e-29
Identities = 85/256 (33%), Positives = 123/256 (48%), Gaps = 5/256 (1%)
Frame = +1
Query: 223 MAKFKLKKPSKRQPARLRYKIEKKVKXHNRKQRXXXXXXXXXXXXXPIQ---IPNICPFK 393
M K K SKR R ++K+ +KVK H+RK+R + IPN PFK
Sbjct: 1 MVKKSKKSKSKRVTLRQKHKVLRKVKEHHRKKRKEAKKEGKSHRKKVEKDPGIPNEWPFK 60
Query: 394 EDILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTNLNTLVTNAQARGKVHE 573
E L NL + A A+G
Sbjct: 61 EQELKALEARRAQALQELELKKEARKERARKRKLGLLEDEDIANL---ASAASAQGS--- 114
Query: 574 AFNGDSQPSQDIEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEE 753
F ++ + Q++S + +Y+E KVI ++VILE++DARDPLGTRCI +E+
Sbjct: 115 EFAEKDAAKENASLDVVKSQDHSERAFYKELVKVIEASDVILEVLDARDPLGTRCIDMEK 174
Query: 754 AVRES--GKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRKMKH 927
VR++ KR+VL+LNK DLVP++++ WL YLR+ P V FK +TQ+Q+ LG + K
Sbjct: 175 MVRKADPSKRIVLLLNKIDLVPKESVEKWLTYLREEMPTVAFKCNTQEQRTKLGWKSSKI 234
Query: 928 IVXEKEMKGSACVGAE 975
+ S C+GAE
Sbjct: 235 DKSSNIPQSSDCLGAE 250
Score = 37.5 bits (83), Expect = 0.021
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 978 LMSLLGNYXRNKGXKHHXSX-CRGTPNVGKSXIINSXXRSKLV-XGXXPGST 1127
L+ LL NY R+ K + G PNVGKS +INS RS++V G PG T
Sbjct: 252 LIKLLKNYSRSHELKLAITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVT 303
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 72.5 bits (170), Expect = 6e-13
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +1
Query: 631 QENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESG--KRLVLVLNKAD 804
++ K + E KVI ++V+++++DARDP+GTRC +E+ ++E+ K LV +LNK D
Sbjct: 205 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCD 264
Query: 805 LVPRDNLTAWLKYLRQSAPAVPFKAS 882
LVP WL+ L + P + F AS
Sbjct: 265 LVPAWATKGWLRTLSKDYPTLAFHAS 290
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 978 LMSLLGNYXRNKGXKHHXSX-CRGTPNVGKSXIINSXXRSKLVXGXXP 1118
L+S+L + R K K S G PNVGKS +IN+ RSK V P
Sbjct: 300 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINT-LRSKSVCKVAP 346
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 53.6 bits (123), Expect = 3e-07
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Frame = +1
Query: 655 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 828
+R+ +V+ +++++ +VDARDPL RC +E +E KR +L++NKADL+P +
Sbjct: 180 WRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAQEIDEHKRTLLLVNKADLLPLNVRQ 239
Query: 829 AWLKYLRQ 852
W +Y +Q
Sbjct: 240 RWAEYFKQ 247
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 50.8 bits (116), Expect = 2e-06
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 655 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 828
+R+ +V+ +++++ +VDARDPL RC +E +E KR ++++NKADL+P +
Sbjct: 163 WRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVNKADLLPMNIRK 222
Query: 829 AWLKYLR 849
W Y +
Sbjct: 223 KWADYFK 229
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 41.5 bits (93), Expect = 0.001
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +1
Query: 658 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 837
R + + +++LE+ DAR P + + E +R ++VLNKADL W+
Sbjct: 33 RAIRSRLPLVDLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQTEKWM 92
Query: 838 KYLRQSA 858
Y++Q++
Sbjct: 93 AYMKQTS 99
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 39.9 bits (89), Expect = 0.004
Identities = 18/72 (25%), Positives = 39/72 (54%)
Frame = +1
Query: 658 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 837
+E K+ + +V++E+ DAR PL T +++ + ++ ++V+N+ D+V ++ AW
Sbjct: 295 KELKEQLKLMDVVIEVRDARIPLATSHPKMDAWL--GNRKRIIVMNREDMVSNEDRNAWA 352
Query: 838 KYLRQSAPAVPF 873
Y V +
Sbjct: 353 SYFANQGTKVVY 364
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 35.5 bits (78), Expect = 0.083
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1
Query: 658 REFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRESGKRLVLVLNKADLVPRDNLTAWL 837
R + + A+++LE+ DAR PL + ++ + + KR +L LNK DL + + WL
Sbjct: 22 RAIRDRLKLADLVLEVRDARIPLSSANEDLQPVL--ASKRRILALNKKDLANPNIMNRWL 79
Query: 838 KY 843
+
Sbjct: 80 HH 81
>09_02_0104 - 4329068-4329926,4330967-4331811
Length = 567
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 717 GSFRNTVYTSRRGSSRIRETSCVSAQ*SRSRPPGQSDSMVKVFKTVCTSSSIQGL 881
GS +++VY + GS E++C S S S+P +DS + + V T GL
Sbjct: 122 GSSKSSVYRASAGSDVSDESTCSSICSSASKPHKSNDSRWEAIQMVRTKEGSLGL 176
>03_05_0201 + 21924279-21925205,21925700-21926320
Length = 515
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 715 RDPLGTRCIQVEEAVRES--GKRLVLVLNKADLVPRDNLTAWL 837
R +G RC + +E +RE RL N ADL P +L WL
Sbjct: 202 RSAIGGRCARRDEFLRELEVSVRLTGGFNLADLYPSSSLARWL 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,149,312
Number of Sequences: 37544
Number of extensions: 378978
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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