Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P08
(1196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 148 9e-36
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 71 2e-12
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 71 2e-12
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 71 2e-12
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 52 6e-07
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 52 6e-07
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 52 6e-07
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 29 4.9
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 29 6.5
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 29 6.5
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 29 6.5
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 148 bits (358), Expect = 9e-36
Identities = 94/253 (37%), Positives = 129/253 (50%), Gaps = 2/253 (0%)
Frame = +1
Query: 223 MAKFKLKKPSKRQPARLRYKIEKKVKXHNRK-QRXXXXXXXXXXXXXPIQIPNICPFKED 399
MAK+ LKK SKR RYKIEKKV+ HNRK ++ I +PN CPFKE+
Sbjct: 1 MAKYCLKKTSKRVSCAKRYKIEKKVRDHNRKVKKEAKKNGTTNKKEKTISVPNSCPFKEE 60
Query: 400 ILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGTNLNTLVTNAQARGKVHEAF 579
IL N ++V A +G
Sbjct: 61 ILVQAEQEREKIKVRQEAAKEAAKIHRIEKRKNNLP----ANFESMVAKASKQGTEF--- 113
Query: 580 NGDSQPSQDIEFGK-DRKQENSLKTYYREFKKVISEAEVILEIVDARDPLGTRCIQVEEA 756
D + + E K + + ++K Y E +K + A+VI++++DARDPLG+R VE+
Sbjct: 114 --DKKVASAAEHEKFNTLDDKTIKAYASEVRKTVEIADVIIQVLDARDPLGSRSKSVEDQ 171
Query: 757 VRESGKRLVLVLNKADLVPRDNLTAWLKYLRQSAPAVPFKASTQDQQHNLGRRKMKHIVX 936
V + GKRLVL+LNK DLVPR+N+ WL+YLR P + FKASTQ+Q+ N+GR I+
Sbjct: 172 VLKGGKRLVLLLNKIDLVPRENVQKWLEYLRGQFPTIAFKASTQEQKSNIGRFN-SAILN 230
Query: 937 EKEMKGSACVGAE 975
E S CVGA+
Sbjct: 231 NTET--SKCVGAD 241
Score = 40.3 bits (90), Expect = 0.003
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 975 VLMSLLGNYXRNKGXKHHXSX-CRGTPNVGKSXIINSXXRSKLV-XGXXPGST 1127
++M +L NY RNK K G PNVGKS +INS R K G PG T
Sbjct: 242 IVMKILANYCRNKDIKTSIRVGVVGFPNVGKSSVINSLKRRKACNVGNLPGIT 294
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 70.5 bits (165), Expect = 2e-12
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 661 EFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRES--GKRLVLVLNKADLVPRDNLTAW 834
E KVI ++V++++VDARDP+GTRC VEE +R+ K LV V+NK DLVP W
Sbjct: 224 ELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTRKW 283
Query: 835 LKYLRQSAPAVPFKAS 882
+ L + P + F AS
Sbjct: 284 IGELSKEMPTIAFHAS 299
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 70.5 bits (165), Expect = 2e-12
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 661 EFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRES--GKRLVLVLNKADLVPRDNLTAW 834
E KVI ++V++++VDARDP+GTRC VEE +R+ K LV V+NK DLVP W
Sbjct: 165 ELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTRKW 224
Query: 835 LKYLRQSAPAVPFKAS 882
+ L + P + F AS
Sbjct: 225 IGELSKEMPTIAFHAS 240
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 70.5 bits (165), Expect = 2e-12
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 661 EFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRES--GKRLVLVLNKADLVPRDNLTAW 834
E KVI ++V++++VDARDP+GTRC VEE +R+ K LV V+NK DLVP W
Sbjct: 224 ELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEKPHKHLVTVINKVDLVPTWVTRKW 283
Query: 835 LKYLRQSAPAVPFKAS 882
+ L + P + F AS
Sbjct: 284 IGELSKEMPTIAFHAS 299
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 52.4 bits (120), Expect = 6e-07
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 655 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 828
+RE +V+ ++++I++IVDAR+PL R +++ V+E K+++L++NKADL+ +
Sbjct: 2 WRELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQA 61
Query: 829 AWLKYLRQSAPAVPF 873
+W +Y + V F
Sbjct: 62 SWREYFEKENIKVIF 76
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 52.4 bits (120), Expect = 6e-07
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 655 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 828
+RE +V+ ++++I++IVDAR+PL R +++ V+E K+++L++NKADL+ +
Sbjct: 2 WRELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQA 61
Query: 829 AWLKYLRQSAPAVPF 873
+W +Y + V F
Sbjct: 62 SWREYFEKENIKVIF 76
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 52.4 bits (120), Expect = 6e-07
Identities = 25/75 (33%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 655 YREFKKVISEAEVILEIVDARDPLGTRCIQVEEAVRE--SGKRLVLVLNKADLVPRDNLT 828
+RE +V+ ++++I++IVDAR+PL R +++ V+E K+++L++NKADL+ +
Sbjct: 171 WRELWRVVEKSDIIVQIVDARNPLLFRSKDLDDYVKEVDPAKQILLLVNKADLLKPEQQA 230
Query: 829 AWLKYLRQSAPAVPF 873
+W +Y + V F
Sbjct: 231 SWREYFEKENIKVIF 245
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -3
Query: 702 LKYYFSFRNDFFKFSIICFE*IFLLPVFSKFNVLRRL 592
+ ++F F + FFKFSI F+ F LP++ F VLR++
Sbjct: 1 MNHFFLFVH-FFKFSI--FDAKFKLPMYQLFTVLRKI 34
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 589 SQPSQDIEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDA 714
S P Q +EF D+ + L Y + KV E +++LEI D+
Sbjct: 514 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDS 555
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 589 SQPSQDIEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDA 714
S P Q +EF D+ + L Y + KV E +++LEI D+
Sbjct: 514 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDS 555
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 29.1 bits (62), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 589 SQPSQDIEFGKDRKQENSLKTYYREFKKVISEAEVILEIVDA 714
S P Q +EF D+ + L Y + KV E +++LEI D+
Sbjct: 553 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDS 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,487,721
Number of Sequences: 27780
Number of extensions: 358966
Number of successful extensions: 974
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -