Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_P03
(1186 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VVL6 Cluster: Mediator of RNA polymerase II transcrip... 216 8e-55
UniRef50_A0JLT2 Cluster: Mediator of RNA polymerase II transcrip... 140 5e-32
UniRef50_A7RLX2 Cluster: Predicted protein; n=1; Nematostella ve... 131 4e-29
UniRef50_UPI0000E48F6A Cluster: PREDICTED: similar to mediator c... 120 7e-26
UniRef50_Q9N4F2 Cluster: Mediator of RNA polymerase II transcrip... 64 9e-09
UniRef50_Q55BA4 Cluster: Putative uncharacterized protein; n=1; ... 40 0.17
UniRef50_A7I5H4 Cluster: Multi-sensor signal transduction histid... 37 0.89
UniRef50_Q2GXY1 Cluster: Putative uncharacterized protein; n=2; ... 35 3.6
>UniRef50_Q9VVL6 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=7; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 19 -
Drosophila melanogaster (Fruit fly)
Length = 337
Score = 216 bits (528), Expect = 8e-55
Identities = 112/182 (61%), Positives = 126/182 (69%), Gaps = 2/182 (1%)
Frame = +2
Query: 176 SPKSSPRGAX-SPVVSRQXSSGTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNL 352
SPKSSP G SPVV+RQ SSGTLKTTISLGK P+I+H+GPFY MKEPP + ELTG +L
Sbjct: 11 SPKSSPHGGGRSPVVARQDSSGTLKTTISLGKTPTIIHTGPFYSMKEPPAKAELTGDKDL 70
Query: 353 MAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQD-DNSTLSSVIAKRPIGGKELL 529
M YGL H+ +KF KK KESL+SFL N+PGI D +NSTL SVI K PIGGKELL
Sbjct: 71 MTEYGLHHTLTKFKEKKFKESLASFLQNIPGINDLITHPVENSTLRSVIEKPPIGGKELL 130
Query: 530 PLTSAQLAGFRLHPGPLPEQYRYVSATPPXXXXXXXXXXXXXDGAPPGQETPLQDSSNPD 709
PLT QLAGFRLHPGPLPEQYR TP DG GQE+ L DS+ +
Sbjct: 131 PLTPVQLAGFRLHPGPLPEQYRTTYVTPARKHKNKHKKQKHKDGVTTGQESTLLDSAGLE 190
Query: 710 TY 715
TY
Sbjct: 191 TY 192
>UniRef50_A0JLT2 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=31; Euteleostomi|Rep:
Mediator of RNA polymerase II transcription subunit 19 -
Homo sapiens (Human)
Length = 244
Score = 140 bits (340), Expect = 5e-32
Identities = 66/118 (55%), Positives = 82/118 (69%)
Frame = +2
Query: 263 GKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLP 442
G + S GPFYLM+E PG ELTG+TNL+ +Y L +Y+KF GKK+KE LS+FLP+LP
Sbjct: 54 GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113
Query: 443 GIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPP 616
G++D PG DNS+L S+I K PI P+T LAGFRLH GPLPEQ R + PP
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPP 171
>UniRef50_A7RLX2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 214
Score = 131 bits (316), Expect = 4e-29
Identities = 64/125 (51%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Frame = +2
Query: 242 LKTTISLGKNPSIVHSGPFYLMK-EPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESL 418
+ TT + + + PFYL++ EPP ++ G++NL+ GL SY KF GKK+KE+L
Sbjct: 2 VSTTSTPTSSTHTTTTSPFYLLRNEPPTPTDINGSSNLLVQNGLEQSYQKFCGKKVKENL 61
Query: 419 SSFLPNLPGIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRY 598
S+FLP+LPG +D G +NS L SVI K PIGGKELLPL S L+GFRL+PGP+PEQ+R+
Sbjct: 62 SAFLPHLPGYIDEKGTPENS-LRSVIDKPPIGGKELLPLPSHALSGFRLNPGPIPEQFRF 120
Query: 599 VSATP 613
++ P
Sbjct: 121 MTQQP 125
>UniRef50_UPI0000E48F6A Cluster: PREDICTED: similar to mediator
complex, subunit, putative; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mediator complex,
subunit, putative - Strongylocentrotus purpuratus
Length = 239
Score = 120 bits (289), Expect = 7e-26
Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Frame = +2
Query: 269 NPSIVHSGPFYLMKEPPGE---CELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNL 439
+P V PFYL+K+PP E+TG T+++++YGL HSY+KF+ KKLKE LS+FLP L
Sbjct: 39 SPPSVDPEPFYLLKDPPISGPGSEVTGETHMISHYGLEHSYNKFSTKKLKEQLSAFLPLL 98
Query: 440 PGIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATP 613
PG +D DNS+L SVI K PI KE+ T+ L GF+LHPG +P+QY+ + P
Sbjct: 99 PGNIDTVSSQDNSSLQSVIEKPPI-TKEITTFTTGMLQGFKLHPGSIPDQYKLLHHQP 155
>UniRef50_Q9N4F2 Cluster: Mediator of RNA polymerase II
transcription subunit 19; n=1; Caenorhabditis
elegans|Rep: Mediator of RNA polymerase II transcription
subunit 19 - Caenorhabditis elegans
Length = 199
Score = 63.7 bits (148), Expect = 9e-09
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Frame = +2
Query: 293 PFYLMKEP-PGECELTGATNLMAYYGLVHSYSKFNG-KKLKESLSSFLPNLPGIVDGPGQ 466
PFY +K P E+ G +L+ Y L F+G +++KE +SSFLP++ G
Sbjct: 21 PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80
Query: 467 DDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYV 601
+ S+L ++I K PI KE+ LTS+ + GF+L GP+ E+YR++
Sbjct: 81 KEASSLRALIEKPPIH-KEISNLTSSSMQGFKLSAGPVDERYRHL 124
>UniRef50_Q55BA4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 299
Score = 39.5 bits (88), Expect = 0.17
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 SGPFYLMKEPPGECE-LTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPG 445
S YL+ E +TG TNL+ ++ L + ++FN K L + S++ NLPG
Sbjct: 2 SSSLYLINPIEKSSENITGETNLLEHFNLYKTLNEFNSKHLSSTYKSYVKNLPG 55
>UniRef50_A7I5H4 Cluster: Multi-sensor signal transduction histidine
kinase; n=1; Candidatus Methanoregula boonei 6A8|Rep:
Multi-sensor signal transduction histidine kinase -
Methanoregula boonei (strain 6A8)
Length = 431
Score = 37.1 bits (82), Expect = 0.89
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -2
Query: 324 SPGGSFIK*NGPLCTIDGFLPKDIVVLSVPEEXWRETTGDXA 199
SP FI+ N LCTI G+ P++++ LS+P ++ + D A
Sbjct: 110 SPDLRFIRVNNALCTISGYTPEELLTLSIPAITVQKESADLA 151
>UniRef50_Q2GXY1 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Chaetomium globosum (Soil fungus)
Length = 1357
Score = 35.1 bits (77), Expect = 3.6
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 116 FVAHGHPSLLSD-QFRXVXPYSPKSSPRGAXSPVVSRQXSSGTLKTTISLGKNPSIVHSG 292
F HPS L + P +P S+P G SP+ + SS T+ + G NPS V SG
Sbjct: 1199 FAIRQHPSSLGGASASAISPMTPSSNP-GNASPIPFIRPSSAMSMTSSAAGSNPSTVASG 1257
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,564,170
Number of Sequences: 1657284
Number of extensions: 17537717
Number of successful extensions: 35852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35839
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 118725460556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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