Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P03
         (1186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    28   2.9  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   6.7  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    26   8.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   8.9  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   8.9  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 840 IHYRKYKCTSRFKSNIEPKE 899
           I +R Y   SRF SN EPKE
Sbjct: 336 IDHRFYNTKSRFNSNFEPKE 355


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 290 GPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLK-ESLSSFLPNLPGIVDGPGQ 466
           G FYL++ P G C+ +G      Y GL       N K +  +  S+    +P  VD P  
Sbjct: 432 GAFYLLQMPFGGCKKSGYGRFAGYEGL---RGICNSKAIAYDRFSAIHTGIPPAVDYPIP 488

Query: 467 D 469
           D
Sbjct: 489 D 489


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 801 NTALSMEALHQTNIHYRKYKCTSRFKS 881
           NT L + AL  T  ++RKY  T+ FK+
Sbjct: 269 NTQLGVLALSATTRYHRKYVTTAMFKN 295


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 SLLSDQFRXVXPYSPKSSPRGAXSPVVSRQXSSGTLK 247
           S +SDQ     P S   SPR   +P+V +Q  S  LK
Sbjct: 443 SQVSDQV-VESPNSSTLSPRNGFAPIVKQQKKSSALK 478


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 244 QNYYILRQKPVYSAQRTILFDERTPG 321
           QNY + RQK +YS +  IL D++T G
Sbjct: 35  QNYEVERQKLIYSGR--ILADDKTVG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,860,268
Number of Sequences: 5004
Number of extensions: 73176
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)