Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P03
         (1186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0050 + 8565612-8566523                                           33   0.44 
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    31   1.3  
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798...    29   5.4  
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    29   9.4  

>10_05_0050 + 8565612-8566523
          Length = 303

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 621 RFGGVALTYLYCSGSGPGCNRKPAN*ALVNGSNSLPPIGLLAITELRV 478
           R GGV + Y +  G GPGC+R     + V+  +   PI +LA T ++V
Sbjct: 33  RCGGVDIPYPF--GIGPGCSRHGFELSCVSNGSGAGPIAVLAGTSIQV 78


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 23/62 (37%), Positives = 30/62 (48%)
 Frame = +2

Query: 305 MKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTL 484
           M  PPGE  LT ATN+  +Y ++H      G     S SS  P+LP       + D S L
Sbjct: 1   MAAPPGEAPLTAATNIEPFY-VLH-----KGGAAASSSSSSAPSLPSSGRARRRIDVSGL 54

Query: 485 SS 490
           +S
Sbjct: 55  AS 56


>12_02_0841 +
           23579344-23579394,23579522-23579584,23579717-23579826,
           23580220-23580320,23580816-23580877,23580972-23581112,
           23581388-23581523,23582257-23582284,23582665-23582728,
           23582924-23583044,23583565-23583623,23583716-23583784,
           23583875-23584015,23584130-23584194,23584345-23584441,
           23584803-23584862,23585409-23585561,23586022-23586088,
           23586174-23586284,23586689-23586799,23587370-23587567,
           23587679-23587860
          Length = 729

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 398 KKLKESLSSFLPNLPGIVDGPGQDDNSTLSSVI-AKRPIGGK 520
           K+L   + SF+ NLP I +GP  D +  LS ++ +  P+G K
Sbjct: 586 KRLSPQMMSFITNLPAI-EGPSPDMDIVLSVLMQSTLPVGDK 626


>08_02_0246 +
           14745367-14745372,14745452-14746106,14746299-14747269,
           14748123-14749168,14750669-14751473
          Length = 1160

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +2

Query: 236 GTLKTTISLGKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKES 415
           G+L++ I+  K  S      + L      +     + ++ A  G V S S+  G   K S
Sbjct: 180 GSLQSNINAAKVTSGTGLNNYLLSNSKNAQSTSAFSGSVPAGLGNVSS-SRSEGAYKKRS 238

Query: 416 LSSFLPNLPG-----IVDGPGQ 466
           LS FL N+P      I DGPG+
Sbjct: 239 LSEFLQNIPSSKQSIIGDGPGK 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,461,611
Number of Sequences: 37544
Number of extensions: 495567
Number of successful extensions: 1008
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)