Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P03
         (1186 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC037223-1|AAH37223.1|  194|Homo sapiens mediator complex subuni...   141   5e-33
BC009723-1|AAH09723.1|  205|Homo sapiens Unknown (protein for IM...   140   7e-33
AY148462-1|AAN16075.1|  177|Homo sapiens lung cancer metastasis-...   128   5e-29

>BC037223-1|AAH37223.1|  194|Homo sapiens mediator complex subunit
           19 protein.
          Length = 194

 Score =  141 bits (341), Expect = 5e-33
 Identities = 70/139 (50%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
 Frame = +2

Query: 263 GKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLP 442
           G + S    GPFYLM+E PG  ELTG+TNL+ +Y L  +Y+KF GKK+KE LS+FLP+LP
Sbjct: 54  GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113

Query: 443 GIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPP-X 619
           G++D PG  DNS+L S+I K PI      P+T   LAGFRLH GPLPEQ R +   PP  
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPPKK 173

Query: 620 XXXXXXXXXXXXDGAPPGQ 676
                       D  PPG+
Sbjct: 174 KNKHKHKQSRTQDPVPPGK 192


>BC009723-1|AAH09723.1|  205|Homo sapiens Unknown (protein for
           IMAGE:3895048) protein.
          Length = 205

 Score =  140 bits (340), Expect = 7e-33
 Identities = 66/118 (55%), Positives = 82/118 (69%)
 Frame = +2

Query: 263 GKNPSIVHSGPFYLMKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLP 442
           G + S    GPFYLM+E PG  ELTG+TNL+ +Y L  +Y+KF GKK+KE LS+FLP+LP
Sbjct: 54  GADKSGAGCGPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLP 113

Query: 443 GIVDGPGQDDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPP 616
           G++D PG  DNS+L S+I K PI      P+T   LAGFRLH GPLPEQ R +   PP
Sbjct: 114 GMIDLPGSHDNSSLRSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPP 171


>AY148462-1|AAN16075.1|  177|Homo sapiens lung cancer
           metastasis-related protein protein.
          Length = 177

 Score =  128 bits (308), Expect = 5e-29
 Identities = 59/104 (56%), Positives = 74/104 (71%)
 Frame = +2

Query: 305 MKEPPGECELTGATNLMAYYGLVHSYSKFNGKKLKESLSSFLPNLPGIVDGPGQDDNSTL 484
           M+E PG  ELTG+TNL+ +Y L  +Y+KF GKK+KE LS+FLP+LPG++D PG  DNS+L
Sbjct: 1   MRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSL 60

Query: 485 SSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYVSATPP 616
            S+I K PI      P+T   LAGFRLH GPLPEQ R +   PP
Sbjct: 61  RSLIEKPPILSSSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPP 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,943,910
Number of Sequences: 237096
Number of extensions: 2864943
Number of successful extensions: 5570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16623961460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)