Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P03
         (1186 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-6|AAF36035.1|  199|Caenorhabditis elegans Mediator prot...    64   2e-10
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    31   2.1  
U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    30   2.8  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    30   2.8  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    30   2.8  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    30   2.8  

>AC024202-6|AAF36035.1|  199|Caenorhabditis elegans Mediator protein
           19 protein.
          Length = 199

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
 Frame = +2

Query: 293 PFYLMKEP-PGECELTGATNLMAYYGLVHSYSKFNG-KKLKESLSSFLPNLPGIVDGPGQ 466
           PFY +K   P   E+ G  +L+  Y L      F+G +++KE +SSFLP++ G       
Sbjct: 21  PFYTLKALLPPYSEIQGNHDLLMSYELGPVEGGFSGSRRVKEKISSFLPHIIGEFHLDAT 80

Query: 467 DDNSTLSSVIAKRPIGGKELLPLTSAQLAGFRLHPGPLPEQYRYV 601
            + S+L ++I K PI  KE+  LTS+ + GF+L  GP+ E+YR++
Sbjct: 81  KEASSLRALIEKPPIH-KEISNLTSSSMQGFKLSAGPVDERYRHL 124


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -3

Query: 740 VFASYAFSHMCLDLMNLVKVSLAQEVHHLYAYVSYVCFYVALVVLHSHICTAQEVGQGVI 561
           +F +Y         M  VK S+   +H + A+V +   ++A+ VL   +C+   +G  ++
Sbjct: 31  LFGAYIIVAKTPRKMRTVKASMLA-LHCIGAFVDFYLSFIAIPVLTLPVCSGYPLGFSLV 89

Query: 560 ENLPTE 543
             +PT+
Sbjct: 90  LGIPTD 95


>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -3

Query: 731 SYAFSHMCLDLMN--LVKVSLAQEVHHLYAYVSYVCFYVALVVLHSHICTAQEVGQGVIE 558
           S+   +  L+L N  +    L +E H   AY+ +V + V L++L S +C      Q +  
Sbjct: 137 SFGMDYAILNLQNGQMRLFDLVKEYHFTLAYLVWVGYVVGLILL-SAVCAHYIAPQAIGS 195

Query: 557 NLPTEH*LMAVILYHQLVS*L*LNLEYCYRPAQVRQRCPAGSEGKMIGIPS 405
            +P    ++  ++  + +S   L  +       +    P G EG  + + S
Sbjct: 196 GIPEMKTILRGVILKEYLSVRTLLSKMIGLTLSLGSGLPMGKEGPFVHVAS 246


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -3

Query: 731 SYAFSHMCLDLMN--LVKVSLAQEVHHLYAYVSYVCFYVALVVLHSHICTAQEVGQGVIE 558
           S+   +  L+L N  +    L +E H   AY+ +V + V L++L S +C      Q +  
Sbjct: 66  SFGMDYAILNLQNGQMRLFDLVKEYHFTLAYLVWVGYVVGLILL-SAVCAHYIAPQAIGS 124

Query: 557 NLPTEH*LMAVILYHQLVS*L*LNLEYCYRPAQVRQRCPAGSEGKMIGIPS 405
            +P    ++  ++  + +S   L  +       +    P G EG  + + S
Sbjct: 125 GIPEMKTILRGVILKEYLSVRTLLSKMIGLTLSLGSGLPMGKEGPFVHVAS 175


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -3

Query: 731 SYAFSHMCLDLMN--LVKVSLAQEVHHLYAYVSYVCFYVALVVLHSHICTAQEVGQGVIE 558
           S+   +  L+L N  +    L +E H   AY+ +V + V L++L S +C      Q +  
Sbjct: 66  SFGMDYAILNLQNGQMRLFDLVKEYHFTLAYLVWVGYVVGLILL-SAVCAHYIAPQAIGS 124

Query: 557 NLPTEH*LMAVILYHQLVS*L*LNLEYCYRPAQVRQRCPAGSEGKMIGIPS 405
            +P    ++  ++  + +S   L  +       +    P G EG  + + S
Sbjct: 125 GIPEMKTILRGVILKEYLSVRTLLSKMIGLTLSLGSGLPMGKEGPFVHVAS 175


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -3

Query: 731 SYAFSHMCLDLMN--LVKVSLAQEVHHLYAYVSYVCFYVALVVLHSHICTAQEVGQGVIE 558
           S+   +  L+L N  +    L +E H   AY+ +V + V L++L S +C      Q +  
Sbjct: 137 SFGMDYAILNLQNGQMRLFDLVKEYHFTLAYLVWVGYVVGLILL-SAVCAHYIAPQAIGS 195

Query: 557 NLPTEH*LMAVILYHQLVS*L*LNLEYCYRPAQVRQRCPAGSEGKMIGIPS 405
            +P    ++  ++  + +S   L  +       +    P G EG  + + S
Sbjct: 196 GIPEMKTILRGVILKEYLSVRTLLSKMIGLTLSLGSGLPMGKEGPFVHVAS 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,592,152
Number of Sequences: 27780
Number of extensions: 434556
Number of successful extensions: 978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)