Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_P01
         (1146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    29   1.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   6.5  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   6.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   8.5  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 434 LSILYSGLCADEVKIVDGPSKYPSCT-CTREMKPVCGSDGITYNNDCLLNCATINDSRLG 610
           LS   SG CA    I+D  S+Y  C  C +   P  G   +   +D LLN  +   S+ G
Sbjct: 158 LSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVC-SDVLLNDDSNCPSKKG 216

Query: 611 I-EYYGPCADKVIVV 652
           I  Y  P  D  +++
Sbjct: 217 INNYQYPRTDPCVIM 231


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 618 YSMPSLESLIVAQFKRQSLLYVIPSLPQTGFISRV 514
           YS+ SL  + V+Q  + S+++++P L    ++ ++
Sbjct: 228 YSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEKI 262


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 716 RGVCSSITGVVFRGSP 669
           RGVC+S+ G ++ GSP
Sbjct: 218 RGVCNSVEGCLYSGSP 233


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 191  YRNQRPVCGTDGKTYNNECLLDC 259
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,289
Number of Sequences: 5004
Number of extensions: 73530
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)