Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O23
(1152 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 221 2e-58
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 149 5e-37
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 111 2e-25
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 59 1e-09
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 32 0.13
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 27 3.7
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 27 3.7
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar... 27 4.9
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 4.9
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 27 6.5
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 27 6.5
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 26 8.6
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 221 bits (539), Expect = 2e-58
Identities = 108/190 (56%), Positives = 136/190 (71%)
Frame = +2
Query: 191 KMTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQ 370
K+ S F KK E EL+ L S IA+MTVGKDVS+LFPDV+ +
Sbjct: 4 KLFQSSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLA 63
Query: 371 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKIT 550
T ++ LKKLVYLYL+NYAK+ PD+ I+AVNTFVKD E+ NP +RALA+RTMGCIRV+KI
Sbjct: 64 TRDITLKKLVYLYLINYAKTHPDLCILAVNTFVKDSEEYNPTLRALAIRTMGCIRVNKII 123
Query: 551 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVAN 730
YL +PLRK LKDE PYVRK AAVCV K+YD+ GF++QL+ L+SD NP+VVAN
Sbjct: 124 GYLADPLRKALKDEHPYVRKAAAVCVVKMYDLDREYCASNGFIEQLQALVSDPNPVVVAN 183
Query: 731 AVAALSEINE 760
AV +L+EI++
Sbjct: 184 AVRSLAEIHD 193
Score = 54.4 bits (125), Expect = 3e-08
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +3
Query: 810 NKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAH 947
++L+ AL+EC EWG++ IL++L+ + D +EA +CER+ P+ H
Sbjct: 209 DRLMVALSECNEWGRITILNSLARFRTSDIKEAEYVCERVVPQFQH 254
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 149 bits (362), Expect = 5e-37
Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 2/214 (0%)
Frame = +2
Query: 197 TDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQTD 376
+ S +F++T + S+ IA ++ G D+S+LFP V++ M+++
Sbjct: 3 SSSSHFSSTAADLLAVFSSDNKDKSANKRISALKKAIAGISYGYDMSSLFPSVISSMESN 62
Query: 377 NLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEY 556
NLELKKL YLYL YA +P A AV + D SNP+IR+LA+RT+ + +
Sbjct: 63 NLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSNPMIRSLALRTLTSVNIKNFWVA 122
Query: 557 LCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAV 736
+P+ + L D DPYVRKTAA+ +AKLY MVE G +D LK++LSD + +VVAN++
Sbjct: 123 AMDPIVRLLDDTDPYVRKTAAIGIAKLYSYDKKMVESSGLIDHLKEMLSDESSVVVANSL 182
Query: 737 AALSEINEASVSGRPLG*NECPND--QQAVDCAE 832
AAL I +S + E N + DC+E
Sbjct: 183 AALMNIVNSSTGFKLTFSREISNKLVKSLTDCSE 216
Score = 52.4 bits (120), Expect = 1e-07
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +3
Query: 810 NKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAH 947
NKL+ +L +C+EW QV ILDAL Y P+ EA S ERI+P L H
Sbjct: 205 NKLVKSLTDCSEWLQVAILDALIFYVPQKPGEAESFAERISPWLQH 250
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 111 bits (267), Expect = 2e-25
Identities = 57/160 (35%), Positives = 94/160 (58%)
Frame = +2
Query: 257 LNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP 436
LNS+ +A M G+++S FPDVV + ++N E+++LV++YL+ YA+ P
Sbjct: 42 LNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQYAEFNP 101
Query: 437 DMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTA 616
D+A+++VNT K D NPL R+ A+R M IRV I + +++C+ D VR++A
Sbjct: 102 DLALLSVNTVQKTLYDKNPLTRSTAIRVMSSIRVPAINGIVLLAIQQCITDTADRVRQSA 161
Query: 617 AVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAV 736
A+ + K Y + S + +K LLSD++P+VV A+
Sbjct: 162 ALAITKCYSLDPSYKSQ--LEEHIKTLLSDNSPIVVPAAL 199
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 58.8 bits (136), Expect = 1e-09
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
Frame = +2
Query: 245 LKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVN-CMQTDNLELKKLVYLYLMNY 421
LK+ L S + + G + ++ V+ M + N ELKKL+Y Y
Sbjct: 20 LKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMPSRNKELKKLLYYYWEVC 79
Query: 422 AKSQPDMA-----IMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLK 586
K D I+A N+F D + N IR +R + ++ ++ + L +R+CL+
Sbjct: 80 PKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKLKEPELLDPLIPTVRQCLE 139
Query: 587 DEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEIN 757
YVRK A + V +Y +S+ ++ D L + L ++S NA+ L I+
Sbjct: 140 HRHAYVRKNAILAVFSIYQVSNHLIPDAASLAE-DFLAAESEGTCKRNALIVLFTID 195
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 32.3 bits (70), Expect = 0.13
Identities = 26/107 (24%), Positives = 49/107 (45%)
Frame = +2
Query: 443 AIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAV 622
A ++ F + +S P ++ + V +E + LR+ +++ED R T
Sbjct: 699 AARRISFFAQSLAESIPKTSSIDAMPTFTVLVPHYSEKILLSLREIIREEDQLSRVTLLE 758
Query: 623 CVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINEA 763
+ +LY VE + F+D K LL+D N V+ + + +N+A
Sbjct: 759 YLKQLYP-----VEWRNFVDDTK-LLADENDSVIGSIDNEKNGVNKA 799
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 368 QTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCE 481
+ DN ++LVY +M Y +Q ++I+ +TF + E
Sbjct: 68 KNDNAAFRELVYNLMMRYVSTQKHLSIIERHTFFQTIE 105
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 840 TEWGQVFILDALSNYSPRDAREAHSICERITPRL 941
T W Q F + +SNY P D H + PRL
Sbjct: 201 TRWSQYFADNIVSNYRPGDLILIHDYSLFLLPRL 234
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 27.5 bits (58), Expect = 3.7
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Frame = +2
Query: 422 AKSQPDMAIMAVNTFVKDCEDSNPLIR---ALAVRTMGC---IRVDKITEYLCEPLRKCL 583
A+S+P + V + ++ + S+P ++ ALA+R + +++ + L + L
Sbjct: 246 AQSEPKL----VRSLIQLMDTSSPKVQCQAALALRNLASDERYQIEIVQSNALPSLLRLL 301
Query: 584 KDEDPYVRKTAAVCVAKL--YDISSSMVEDQGFLDQLKDLLS-DSNPMVVANAVAALSEI 754
+ + + C+ + + ++ S + D GFL L DLLS N + +AV+ L +
Sbjct: 302 RSSYLPLILASVACIRNISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNL 361
Query: 755 NEAS 766
+S
Sbjct: 362 AASS 365
>SPBC215.14c |vps20||vacuolar sorting protein
Vps20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 4.9
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 533 RVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLS 703
R++KI + + RKCL+D D A+ KLY S + + G L ++ LLS
Sbjct: 31 RLEKIEQLEIDIARKCLRDSDKR-GALRALKAKKLY--SGLITQTYGQLGNIEQLLS 84
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -3
Query: 664 FNHA*RDII*LCDAHGCSLPDIRIFIFQALS*WFA*IFCNLVHSNASHSPYSQSSN 497
F HA ++ C+ H SLP++ + + W +FC + ++ S QS+N
Sbjct: 465 FKHAIYKLLGNCEPHRVSLPEVCVTSEDYM--WIQLMFCRVNQNDVIDSNGGQSTN 518
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 644 ISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEINEASVSGRPLG*NECPND 808
+S ++ +L++ K+ L+ NP V+ + + + + S RP E PND
Sbjct: 70 VSCKLIVKIDWLNEPKESLTPGNPYVIWHRKPEMKVGSPYTPSTRPASHTEAPND 124
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 539 DKITEYLCEPLRKCLKDEDPYVR 607
+K TEYL + LKDE+P VR
Sbjct: 357 EKTTEYLLPMFLELLKDENPEVR 379
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 774 DGPLVEMNAPTINKLLTALNECTEWGQ 854
DGP+V + APT + ECT++G+
Sbjct: 194 DGPIVLVLAPTRELAVQIQQECTKFGK 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,714,643
Number of Sequences: 5004
Number of extensions: 69366
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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