Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O23
(1152 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 327 1e-89
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 327 1e-89
AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans AP... 161 1e-39
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 112 4e-25
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 112 4e-25
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 56 4e-08
AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical ... 48 2e-05
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 40 0.004
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 327 bits (803), Expect = 1e-89
Identities = 154/189 (81%), Positives = 173/189 (91%)
Frame = +2
Query: 194 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQT 373
MTDSKYFTTTKKGEIFELK+ELNSD IASMTVGKDVSALFPDVVNCMQT
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQT 60
Query: 374 DNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITE 553
DN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVKDCED NPLIRALAVRTMGCIRV+KITE
Sbjct: 61 DNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITE 120
Query: 554 YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANA 733
YLC+PLR+C+KDEDPYVRKTAAVCVAKL+D++ ++V++QGF++ L DLLSD+NPMVVANA
Sbjct: 121 YLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANA 180
Query: 734 VAALSEINE 760
VAAL+E+NE
Sbjct: 181 VAALTEMNE 189
Score = 95.5 bits (227), Expect = 6e-20
Identities = 40/55 (72%), Positives = 49/55 (89%)
Frame = +3
Query: 783 LVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAH 947
++E+N+ +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE +ICERI+PRLAH
Sbjct: 193 VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNICERISPRLAH 247
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 327 bits (803), Expect = 1e-89
Identities = 154/189 (81%), Positives = 173/189 (91%)
Frame = +2
Query: 194 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQT 373
MTDSKYFTTTKKGEIFELK+ELNSD IASMTVGKDVSALFPDVVNCMQT
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQT 60
Query: 374 DNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITE 553
DN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVKDCED NPLIRALAVRTMGCIRV+KITE
Sbjct: 61 DNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITE 120
Query: 554 YLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANA 733
YLC+PLR+C+KDEDPYVRKTAAVCVAKL+D++ ++V++QGF++ L DLLSD+NPMVVANA
Sbjct: 121 YLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELLNDLLSDANPMVVANA 180
Query: 734 VAALSEINE 760
VAAL+E+NE
Sbjct: 181 VAALTEMNE 189
Score = 95.5 bits (227), Expect = 6e-20
Identities = 40/55 (72%), Positives = 49/55 (89%)
Frame = +3
Query: 783 LVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAH 947
++E+N+ +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE +ICERI+PRLAH
Sbjct: 193 VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNICERISPRLAH 247
>AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans APB-1
protein, isoform b protein.
Length = 226
Score = 161 bits (390), Expect = 1e-39
Identities = 84/118 (71%), Positives = 88/118 (74%), Gaps = 2/118 (1%)
Frame = +2
Query: 194 MTDSKYFTTTKKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQT 373
MTDSKYFTTTKKGEIFELK+ELNSD IASMTVGKDVSALFPDVVNCMQT
Sbjct: 1 MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQT 60
Query: 374 DNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDC--EDSNPLIRALAVRTMGCIRVD 541
DN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVK D N A V + R D
Sbjct: 61 DNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKVAIKNDINAFYFATTVPLLAYFRED 118
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 112 bits (270), Expect = 4e-25
Identities = 63/171 (36%), Positives = 99/171 (57%)
Frame = +2
Query: 242 ELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNY 421
+LK+ L+S+ I + GKDVS LF VV + N+ELKKLV++YL+ Y
Sbjct: 18 DLKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAAKNVELKKLVFVYLVRY 77
Query: 422 AKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPY 601
A+ Q D+A+++++TF + +D N LIR A+R + IRV + + ++ ++D PY
Sbjct: 78 AEEQQDLALLSISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVRDMSPY 137
Query: 602 VRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEI 754
VRK AA + KLY + + E Q +D + LL+D +V+ +AV A EI
Sbjct: 138 VRKVAAHAIPKLYSLEPEL-EPQ-LVDCIDFLLADRRSLVLGSAVYAFDEI 186
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 112 bits (270), Expect = 4e-25
Identities = 63/171 (36%), Positives = 99/171 (57%)
Frame = +2
Query: 242 ELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNY 421
+LK+ L+S+ I + GKDVS LF VV + N+ELKKLV++YL+ Y
Sbjct: 18 DLKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAAKNVELKKLVFVYLVRY 77
Query: 422 AKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPY 601
A+ Q D+A+++++TF + +D N LIR A+R + IRV + + ++ ++D PY
Sbjct: 78 AEEQQDLALLSISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVRDMSPY 137
Query: 602 VRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALSEI 754
VRK AA + KLY + + E Q +D + LL+D +V+ +AV A EI
Sbjct: 138 VRKVAAHAIPKLYSLEPEL-EPQ-LVDCIDFLLADRRSLVLGSAVYAFDEI 186
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Frame = +2
Query: 320 VGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLI 499
+G D+ + VN + ++ K++ YL++ + Q D+ + V D NP+
Sbjct: 67 LGNDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLIEQQSDLMKLIVQGIRNDLTSRNPVH 126
Query: 500 RALAVRTMGCIRVDKITEYLCEPLRKCLKDED--PYVRKTAAVCVAKLYDISSSMVEDQG 673
LA++ + + ++ E C L K L + +V+++AA+C+ KL+ S +
Sbjct: 127 VNLALQCISNMGSREMVEAFCTDLPKLLVSGETIDFVKQSAALCILKLFRNSPDSFQPGD 186
Query: 674 FLDQLKDLLSDSNPMVVANAVAALSEINE 760
+ ++ LL+DS+ VV +A + + +++
Sbjct: 187 YASRIVHLLNDSHMGVVTSAASLIEALSK 215
>AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical
protein Y105E8A.9 protein.
Length = 829
Score = 47.6 bits (108), Expect = 2e-05
Identities = 30/126 (23%), Positives = 60/126 (47%)
Frame = +2
Query: 389 KKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEP 568
K++ YL M + ++ ++ N+ D S + LA+ T+G I ++ L
Sbjct: 104 KRIGYLGAMLLLDERSEVHMLVTNSLKNDLTCSTQFVSGLALCTLGSICSAEMCRDLANE 163
Query: 569 LRKCLKDEDPYVRKTAAVCVAKLYDISSSMVEDQGFLDQLKDLLSDSNPMVVANAVAALS 748
+ K +K + Y++K AA+C ++ ++E F+ + LL + N V+ A ++
Sbjct: 164 VEKIIKQNNAYLKKKAALCAFRIVRKVPELME--VFIPCTRSLLGEKNHGVLMGATTLVT 221
Query: 749 EINEAS 766
E+ E S
Sbjct: 222 EMCEKS 227
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 39.5 bits (88), Expect = 0.004
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = +2
Query: 362 CMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNTFVKDCEDSNPLIRALAVRTMG 526
C+ ++ LKK++ ++ K+ + I+ + + KD + N +R +R +
Sbjct: 67 CLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMILVCDAYRKDLQHPNEFVRGSTLRFLC 126
Query: 527 CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISSSMVED 667
+R ++ E L +R CL+ YVR+ A + +Y ++ D
Sbjct: 127 KLREPELLEPLMPAIRACLEHRHSYVRRNAVCAIFTIYKNFEFLIPD 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,234
Number of Sequences: 27780
Number of extensions: 393734
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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