Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O22
(1194 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.53
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.53
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 4.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.9
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 6.5
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 6.5
AF039710-7|AAB96687.1| 123|Caenorhabditis elegans Hypothetical ... 29 6.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 8.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 8.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 8.6
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.53
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = -1
Query: 1167 PXGXXRGTPXXXXXPXGFPPXXXGXXFXXXXXGXGXWXXPPXPXFXXSGPXXPXXPXXFP 988
P G G P P PP G G G PP P G P P +P
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPP------GMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Query: 987 XXSPXXXXTPXPPLGXAXP 931
P P P A P
Sbjct: 357 SAGPGMYPPPPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.53
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = -1
Query: 1167 PXGXXRGTPXXXXXPXGFPPXXXGXXFXXXXXGXGXWXXPPXPXFXXSGPXXPXXPXXFP 988
P G G P P PP G G G PP P G P P +P
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPP------GMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Query: 987 XXSPXXXXTPXPPLGXAXP 931
P P P A P
Sbjct: 367 SAGPGMYPPPPPSRPPAPP 385
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 4.9
Identities = 31/135 (22%), Positives = 35/135 (25%), Gaps = 2/135 (1%)
Frame = -2
Query: 1187 PGXXXGXPGGXXGXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGP 1008
PG G PPG P P F + G P GP
Sbjct: 227 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGP 286
Query: 1007 LXPXFFXXXPPXXGXP-XFPPLGXL-XXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAX 834
P PP G P F P G PP G P P+ +P +
Sbjct: 287 PGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS-GG 345
Query: 833 XXXXXKPPXPPPXPG 789
P PP G
Sbjct: 346 PPGPFNPSGAPPSGG 360
Score = 29.5 bits (63), Expect = 4.9
Identities = 32/140 (22%), Positives = 36/140 (25%), Gaps = 4/140 (2%)
Frame = -2
Query: 1187 PGXXXGXPGGXXGXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGP 1008
PG G PPG P P F + G P GP
Sbjct: 362 PGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGP 421
Query: 1007 LXPXFFXXXPPXXGXP-XFPPLG-XLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAX 834
P PP G P F P G PP G P P+ +P +
Sbjct: 422 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGP 481
Query: 833 XXXXXKPPXPPP--XPGTXN 780
PP PG N
Sbjct: 482 PGPFDPSGAPPSGGPPGPFN 501
Score = 29.1 bits (62), Expect = 6.5
Identities = 31/135 (22%), Positives = 35/135 (25%), Gaps = 2/135 (1%)
Frame = -2
Query: 1187 PGXXXGXPGGXXGXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGP 1008
PG G PPG P P F + G P GP
Sbjct: 152 PGPFDPSGAPPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGP 211
Query: 1007 LXPXFFXXXPPXXGXP-XFPPLG-XLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAX 834
P PP G P F P G PP G P P+ +P +
Sbjct: 212 TGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS-GG 270
Query: 833 XXXXXKPPXPPPXPG 789
P PP G
Sbjct: 271 PPGPFDPSGAPPSGG 285
Score = 28.7 bits (61), Expect = 8.6
Identities = 30/128 (23%), Positives = 34/128 (26%), Gaps = 4/128 (3%)
Frame = -2
Query: 1151 GXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGPLXPXFFXXXPPX 972
G PPG P P F + G P GP P PP
Sbjct: 224 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 283
Query: 971 XGXP-XFPPLG-XLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAXXXXXXKPPXPPP 798
G P F P G PP G P P+ +P + PP
Sbjct: 284 GGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 343
Query: 797 --XPGTXN 780
PG N
Sbjct: 344 GGPPGPFN 351
Score = 28.7 bits (61), Expect = 8.6
Identities = 32/140 (22%), Positives = 36/140 (25%), Gaps = 4/140 (2%)
Frame = -2
Query: 1187 PGXXXGXPGGXXGXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGP 1008
PG G PPG P P F + G P GP
Sbjct: 272 PGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGP 331
Query: 1007 LXPXFFXXXPPXXGXP-XFPPLG-XLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAX 834
P PP G P F P G PP G P P+ +P +
Sbjct: 332 PGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGP 391
Query: 833 XXXXXKPPXPPP--XPGTXN 780
PP PG N
Sbjct: 392 PGPFDPSGAPPSGGPPGPFN 411
Score = 28.7 bits (61), Expect = 8.6
Identities = 31/135 (22%), Positives = 35/135 (25%), Gaps = 2/135 (1%)
Frame = -2
Query: 1187 PGXXXGXPGGXXGXPPGXXXPXRXSPPXXWXXXFXXXXGGXAXGKXPPXRXXXXXALXGP 1008
PG G PPG P P F + G P GP
Sbjct: 347 PGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGP 406
Query: 1007 LXPXFFXXXPPXXGXP-XFPPLG-XLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAX 834
P PP G P F P G PP G P P+ +P +
Sbjct: 407 PGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPS-GG 465
Query: 833 XXXXXKPPXPPPXPG 789
P PP G
Sbjct: 466 PPGPFNPSGAPPSGG 480
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen protein
142 protein.
Length = 325
Score = 29.5 bits (63), Expect = 4.9
Identities = 24/92 (26%), Positives = 26/92 (28%), Gaps = 1/92 (1%)
Frame = +3
Query: 909 PXXGXGXXXQXXQGGEXGXPXXRGXXXEKXGXQXAXKGXXXXXXGWGGFXXGPAPXXXSK 1088
P G Q G G P RG + G GG P +
Sbjct: 150 PKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGLPGPSGR 209
Query: 1089 XXXPXXXGGX-PXGXXXXXGXPGXXPXGPPXP 1181
P GG G G PG P GPP P
Sbjct: 210 PGPPGPAGGPGQPGHSGGAGSPG--PQGPPGP 239
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -1
Query: 1050 PPXPXFXXSGPXXPXXPXXFPXXSPXXXXTPXPPLGXAXPXXPXRXPG 907
PP P P P P P P PP G A P P PG
Sbjct: 188 PPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPP-GEAGPQGPPGSPG 234
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 29.1 bits (62), Expect = 6.5
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -1
Query: 1050 PPXPXFXXSGPXXPXXPXXFPXXSPXXXXTPXPPLGXAXPXXPXRXPG 907
PP P P P P P P PP G A P P PG
Sbjct: 188 PPGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPP-GEAGPQGPPGSPG 234
>AF039710-7|AAB96687.1| 123|Caenorhabditis elegans Hypothetical
protein C46E10.2 protein.
Length = 123
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 238 FYNIYWSKYNIFSTTF 285
F+NIYWS Y IF TF
Sbjct: 11 FFNIYWSFYAIFGFTF 26
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 8.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 980 PPXXGXPXFPPLGXLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAXXXXXXKP---- 813
PP PPL PP G R G P PT SP P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 812 PXPPPXP 792
P PPP P
Sbjct: 297 PPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 8.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 980 PPXXGXPXFPPLGXLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAXXXXXXKP---- 813
PP PPL PP G R G P PT SP P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 812 PXPPPXP 792
P PPP P
Sbjct: 318 PPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 8.6
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = -2
Query: 980 PPXXGXPXFPPLGXLXXXPPXXXRGXXVXXRGXGXAPHXPTXSPRAXAXXXXXXKP---- 813
PP PPL PP G R G P PT SP P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR-TGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 812 PXPPPXP 792
P PPP P
Sbjct: 303 PPPPPPP 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,508,380
Number of Sequences: 27780
Number of extensions: 293717
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3276419812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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