Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O21
         (1213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.48 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   9.2  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 0.48
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 449 PPPPPPPXXXXPP 487
           P PPPPP    PP
Sbjct: 236 PAPPPPPPPTLPP 248



 Score = 24.2 bits (50), Expect(2) = 0.48
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 431 PLXXXXPPPPPPP 469
           P     PPPPPPP
Sbjct: 184 PSDYNPPPPPPPP 196


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 531 GSXPVXGEXXPPXLGGGXXXFGGGGGGGXXXXRGF 427
           G  P   E  P   GGG   FGGG GG      GF
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 489 GGGXXXFGGGGGGGXXXXRGF 427
           GGG   FGGG GG      GF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF 207


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 391 PGKXXXXXXXPGEXPXXXXPPPPPP 465
           PG        PG  P    PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 449 PPPPPPPXXXXPP 487
           PPPPPPP    PP
Sbjct: 9   PPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +2

Query: 803 PXGRGXXPXNPXPNXXGXGXXPPPXAXXGAXTPPXXPGGXPXXKKXFXPXXPP 961
           P GR   P  P  +    G  PPP +   A + P  P   P       P  PP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNP--PAPPPAIPGRSAPALPP 405


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 449  PPPPPPPXXXXPPP 490
            P PPPPP    PPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 431 PLXXXXPPPPPPP--XXXXPPP 490
           P+    PPPPPPP      PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = +3

Query: 420 PXGXPXXXXXPPPPPP---QXXGXPPP 491
           P   P     PPPPPP      G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 421 PGEXPXXXXPPPPPPP 468
           P   P    PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 424 GEXPXXXXPPPPPPP 468
           G  P    PPPPPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.305    0.143    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,399
Number of Sequences: 5004
Number of extensions: 26653
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)