Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O20
(1216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 188 2e-48
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 97 4e-21
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 73 1e-13
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 60 5e-10
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 58 2e-09
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 54 3e-08
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 2.3
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 27 5.3
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 9.2
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 188 bits (457), Expect = 2e-48
Identities = 93/206 (45%), Positives = 132/206 (64%), Gaps = 2/206 (0%)
Frame = +3
Query: 399 LDVYIEHRIMLEARNHRIPGXMRDPRNR-YPPELIRRFEVYFKDLSTSKS-VPIREVKAE 572
LDV ++ R+ RN I DP ++ +PPEL R +++YF+ ++ +K +R+++ E
Sbjct: 125 LDVIMQQRVQ---RNENI-----DPEHKGFPPELTRGYDLYFRPVTRNKKPFSVRDLRGE 176
Query: 573 HIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTADDCRLNK 752
++G L+TVRGIVTR +DVKP L V Y+C CG E +Q +R F P C +D+C+ N
Sbjct: 177 NLGSLLTVRGIVTRTSDVKPSLTVNAYTCDRCGYEVFQEIRQKTFLPMSECPSDECKKND 236
Query: 753 TAGQLHLQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPGXHVAITG 932
GQL + TR S+F FQE+KIQE ++QVP+GHIPR L+V+ G TR PG V I+G
Sbjct: 237 AKGQLFMSTRASKFLPFQEVKIQELTNQVPIGHIPRSLTVHLYGAITRSVNPGDIVDISG 296
Query: 933 LFLXLHNVGFRQIMQGWLSDTYLEXH 1010
+FL GFR + G L+DTYLE H
Sbjct: 297 IFLPTPYTGFRAMRAGLLTDTYLECH 322
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 97.1 bits (231), Expect = 4e-21
Identities = 47/135 (34%), Positives = 80/135 (59%)
Frame = +3
Query: 552 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTA 731
IR+++ + IG+L T+ G VTR ++V+P L T+ C C +A ++T P C
Sbjct: 198 IRDLRTDRIGRLTTITGTVTRTSEVRPELAQGTFICEECHTVVSNVEQAFRYTEPTQCPN 257
Query: 732 DDCRLNKTAGQLHLQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPG 911
+ C NK + +L++ S FQ +Q+++IQE+S+++P G +PR L V RG+ RA+ G
Sbjct: 258 ELCA-NKRSWRLNISQ--SSFQDWQKVRIQENSNEIPTGSMPRTLDVILRGDIVERAKAG 314
Query: 912 XHVAITGLFLXLHNV 956
A TG+ + + +V
Sbjct: 315 DKCAFTGILIAVPDV 329
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 72.5 bits (170), Expect = 1e-13
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 4/196 (2%)
Frame = +3
Query: 363 DYKFKXVVAKXSLDVYIEHRIMLEARNHRIPGXMRDPRNRYPPELIRR---FEVY-FKDL 530
D K K +Y + ++ + I M D PPE + ++Y +
Sbjct: 224 DLKHYPPTKKLYHQLYSYPQEIIPIMDQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPF 283
Query: 531 STSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFT 710
+ K + +R++ I KL++++G+V RCT V P + A + CS CG + +
Sbjct: 284 NLEKCINMRDLNPGDIDKLISIKGLVLRCTPVIPDMKQAFFRCSVCGHCVTVEIDRGRIA 343
Query: 711 PPPACTADDCRLNKTAGQLHLQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGET 890
P C + C +H S F Q +K+QE D VP G P +S+ E
Sbjct: 344 EPIKCPREVCGATNAMQLIH---NRSEFADKQVIKLQETPDVVPDGQTPHSVSLCVYDEL 400
Query: 891 TRRAQPGXHVAITGLF 938
A+ G + +TG+F
Sbjct: 401 VDSARAGDRIEVTGIF 416
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 60.5 bits (140), Expect = 5e-10
Identities = 34/129 (26%), Positives = 60/129 (46%)
Frame = +3
Query: 552 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQFTPPPACTA 731
+R+++ H+ LV V G+VTR T + P L ++C+ CGA T P
Sbjct: 299 LRDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTCTKCGA-TLGPFFQDSSVEVKISFC 357
Query: 732 DDCRLNKTAGQLHLQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGETTRRAQPG 911
+C + G + + + + +Q + +QE VP G +PR V + A+PG
Sbjct: 358 HNC---SSRGPFVINSERTVYNNYQRITLQESPGTVPSGRLPRHREVILLADLVDVAKPG 414
Query: 912 XHVAITGLF 938
+ +TG++
Sbjct: 415 EEIDVTGIY 423
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Frame = +3
Query: 507 FEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQ 686
F V F+ V R ++A H+ K++++ GIVTRC+ V+P ++ + + C A ++
Sbjct: 102 FYVGFRGSFGDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYCEATKRHHFK 161
Query: 687 PVR------ALQFTPPPACTADDCRLNKTAGQLHLQTRGSRFQKFQELKIQEHSDQVPVG 848
L F T D+ L ++ S F+ Q + +QE ++ P G
Sbjct: 162 QYADATMNGGLSFQSTVYPTQDE-----NGNPLSIEFGFSTFRDHQSISLQEMPERAPPG 216
Query: 849 HIPRQLSVYCRGETTRRAQPGXHVAITGLF 938
+PR + + + +PG V I G +
Sbjct: 217 QLPRSIDILLDDDLVDTVKPGDRVNIVGQY 246
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 54.4 bits (125), Expect = 3e-08
Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Frame = +3
Query: 546 VPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRA--LQFTPPP 719
+PIR + A HI KLV V GI+ + + C C A + P
Sbjct: 130 LPIRNLTASHISKLVRVPGIIIGASTLSCRATALHLVCRNCRATRILQISGGFSGVQLPR 189
Query: 720 ACTA---DDCRLNKTAGQLHLQTRGSRFQKFQELKIQEHSDQVPVGHIPRQLSVYCRGET 890
C A D + + + S F Q LK+QE D VPVG +PR + +
Sbjct: 190 VCEAPVLDGEKKDCPMDPFIIDHSKSTFIDQQVLKLQEAPDMVPVGELPRHILLNADRYL 249
Query: 891 TRRAQPGXHVAITGLFLXLHN 953
T + PG ITG+F N
Sbjct: 250 TNQITPGTRCVITGIFSIFQN 270
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 964 RKPTLCNXRKSPVMA--TXSPGCARRVVSPRQYTDS 863
R+P LCN SP++ T PG R R+Y+DS
Sbjct: 455 RQPQLCNSSHSPLLGFFTTLPGILRVFQCFRRYSDS 490
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 882 RGSTR-TAGAGCGPPGLGRSAPVS*APGTSGT 790
+G+ R T GAGC +G +AP+ PG GT
Sbjct: 154 KGNARPTGGAGCVALLVGPNAPIVFEPGLRGT 185
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 639 VVATYSCSACGAETYQPVRALQFTPPPACTA 731
++++ CS CG QP+R +F P T+
Sbjct: 436 LLSSQPCSLCGFNRTQPLRQFEFRSRPDSTS 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,367
Number of Sequences: 5004
Number of extensions: 57155
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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