Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O18
(1189 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 152 1e-37
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 80 7e-16
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 72 1e-13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 68 3e-12
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 64 4e-11
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 58 2e-09
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 57 4e-09
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 55 2e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 53 9e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 52 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 51 3e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 3e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 50 8e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 48 3e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 3e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 1e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 1e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 45 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 43 1e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 3e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 41 4e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.002
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 35 0.019
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 35 0.019
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.025
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.034
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 34 0.045
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.045
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.14
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.24
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.24
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.24
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.41
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 31 0.41
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.72
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 28 2.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 2.9
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 3.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 152 bits (368), Expect = 1e-37
Identities = 69/172 (40%), Positives = 113/172 (65%)
Frame = +3
Query: 267 KLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 446
K+FIGGL++ TTD SL+ ++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 447 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 626
+ H +DG+I++PKRA+PREE ++ K+FV G+ D EE+ R +F+ FG ++
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 627 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHLDVKKAISKTDM 782
+++ DK+TG+ RGFGFV +++ V+ Q I + ++VK+A K +
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328
Score = 70.5 bits (165), Expect = 4e-13
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +3
Query: 246 EAPEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 425
E E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 426 VDEAQNNRPH-KIDGRIVEPKRAVPREEIK 512
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 79.8 bits (188), Expect = 7e-16
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Frame = +3
Query: 219 KPSESGXXXEAPEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFG 398
+P++ + T +F+G L + D L +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 399 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEA-----------SATVKK 542
++ + A N +IDGR+V + PR +P A S
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQ 722
+FV L + E+DL F G+I S+ + TD ++G+ +GFG+V F D D + C++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEM 426
Query: 723 N 725
N
Sbjct: 427 N 427
Score = 46.4 bits (105), Expect = 8e-06
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +3
Query: 255 EHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 434
E + +F+G L + T+ L + G+I + + DP++ R KGFG++T+S +
Sbjct: 363 EPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Query: 435 AQNNRPHKIDGRIVEPKRAVPR 500
H I GR + PR
Sbjct: 423 CVEMNGHFIAGRPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 72.1 bits (169), Expect = 1e-13
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 13/168 (7%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--- 440
++I LD T+ + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 441 NNRPHKIDGRIV--EPKRAVPREEIKRPEASATVKK--------LFVAGLKQDIEEEDLR 590
N++ +K V K+ EE+++ ++K LF+ L+ ++++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 591 EYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQI 734
FS FG I S ++TD E GK +GFGFV + + ++ + N ++
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Score = 61.7 bits (143), Expect = 2e-10
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 449
L++G LD T++ L + G + + V +D T+RS G+ ++ + ++A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 450 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 626
+ I GR P R + + T +F+ L I+ + L + FS FG I+S
Sbjct: 142 NYTLIKGR---PCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 627 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHLDVKKAISKTD 779
V D E G +G+GFV FD + + N + D+ + V +S+ +
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 67.7 bits (158), Expect = 3e-12
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 446
+++G LD + TDS L Q G +V++ + +D GFGF + V+ A Q
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 447 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 626
K+ G+ + RA + + LFV L ++E L + FS G +V
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVN----TLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128
Query: 627 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 731
V E G+ +G+GFV +D ++ D N+Q
Sbjct: 129 PQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQ 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 64.1 bits (149), Expect = 4e-11
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 446
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 447 RPHKIDGRIVEPKRAVPRE--EIKRPEASATVK--------KLFVAGLKQDIEE-EDLRE 593
+ K+ GRI+ A PR+ E+ + A K +L + L I++ + L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 594 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAIS 770
+FS FG + + + T K G+ GF FV D + N +I + + V A+S
Sbjct: 127 HFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVS 185
Query: 771 K 773
K
Sbjct: 186 K 186
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 410
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ- 719
LFV L ++EDL FS FG I+S V+ DKETG + F+EFD+ + V++ +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 720 QNHQIKDQ--HLDVKKAISK 773
QN I D H+D +++++
Sbjct: 306 QNVLIDDSRIHVDFSQSVAR 325
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 57.2 bits (132), Expect = 4e-09
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 4/173 (2%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--N 443
L++G L+ T++ ++ + G+ V V ++++ T + G+ F+ ++ H A N
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 444 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFGNIV 620
N+P + + A ++ + A+ +FV L ++ E D+ F S + +
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 621 SVSVVTDKETGKKRGFGFVEF-DDYDPVDRVCLQQNHQIKDQHLDVKKAISKT 776
S ++TD +T RG+GFV F D+ D + Q D+ + V A K+
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS 267
Score = 40.7 bits (91), Expect = 4e-04
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSL-KXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--------AH 422
+F+G L + + F ++ +M DP+T S+G+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 423 MVDEAQNNRPHKID-------GRIVEPKRAVPRE-------EIKRPE---ASATVKKLFV 551
M + +RP ++ + P VP +P A +FV
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 552 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
GL + + EE+L+ F FG IV V + K G GFV+F
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Score = 30.7 bits (66), Expect = 0.41
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 443
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 54.8 bits (126), Expect = 2e-08
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Frame = +3
Query: 219 KPSE-SGXXXEAPEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGF 395
+P E S E R +F+ L R T L F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 396 GFITYSQAHMVDEAQNNRPHKIDGRIV--------EPKRAVPREEIKR-PEASATVKKLF 548
++ + V A ++ G V + ++A E+ R A +L
Sbjct: 284 AYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLC 343
Query: 549 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
V+ + ++ +ED++ F FG+I V + D + + +GFG++++
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.8 bits (121), Expect = 9e-08
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +3
Query: 540 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ 719
+LFV L D+ +E L + FS + ++V VV D+E GK RGFGFV F D D + +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 720 QN 725
+N
Sbjct: 90 KN 91
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 52.0 bits (119), Expect = 2e-07
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 689
+++ L D+ E+D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 449
++IG LD+ + + + ++GE VD+ +++D +T +SKGF F+ Y A +N
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 450 PH-KIDGRIV 476
+ K+ R+V
Sbjct: 93 TNVKLLDRLV 102
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 51.2 bits (117), Expect = 3e-07
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Frame = +3
Query: 258 HTRKLFIGGLDYRTTDSSLKXFYEQ-----WGEIVDVVVMKDPKTKR--SKGFGFITYSQ 416
HT K + R T +K E+ E + + M K KR +KGF ++ ++
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT 174
Query: 417 AHMVDEAQNNRPHKIDGRIVEPKR--------AVPREEIKRPEASATVKK-----LFVAG 557
+ A ++GR + K + P + + + + KK LFV
Sbjct: 175 EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
Query: 558 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 695
L + + DL+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 235 LDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 3e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 695
L V L D EE+LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 35.5 bits (78), Expect = 0.015
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 410
L + L T + L+ + ++G I V + KD +T R+KGF F++Y
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.4 bits (115), Expect = 5e-07
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 446
LF+ G+ R + L+ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 447 RPHKIDGRIVEPKRA 491
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 49.6 bits (113), Expect = 8e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 498 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGF 674
+E PE S + LFV+G+ ++E++L++ FS FG + V ++ + T RGFGF
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
Query: 675 VEFDDYDPVDRVCLQQNHQ-IKDQHLDVKKA 764
+ F + N Q + L+V+KA
Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 49.6 bits (113), Expect = 8e-07
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +3
Query: 501 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 680
E+ + + + K+LF+ L E+DL+ F FG + V + DK+T +GF +++
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
Query: 681 FDDYDPVDRVCLQ 719
F D D R L+
Sbjct: 371 FHDADDAVRAYLE 383
Score = 26.6 bits (56), Expect = 6.8
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD---KETGK--KRGFGFVEFDDYDPVDR 707
++V L ++E+ ++ F +S + K GK GFGFVEF D
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 708 VCLQQNHQIKDQH-LDVK 758
N + D H L++K
Sbjct: 681 AMHAMNGFVLDGHKLEIK 698
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 501 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 680
+ + P T + +FV L + EEE L YF G+I V +V D +T +GF +++
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 681 FDDYDPVDRVCL 716
F D VD+ L
Sbjct: 318 FKDTMGVDKALL 329
Score = 44.4 bits (100), Expect = 3e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 252 PEHTRK-LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 428
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 429 DEAQNNRPHKI-DGRIVEPKRA 491
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 47.6 bits (108), Expect = 3e-06
Identities = 20/85 (23%), Positives = 45/85 (52%)
Frame = +3
Query: 501 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 680
E ++ + S + ++V + + E+L+ +F++ G++ V+++ DK TG +GF ++E
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIE 102
Query: 681 FDDYDPVDRVCLQQNHQIKDQHLDV 755
F + V L + ++ L V
Sbjct: 103 FSEPSLVPNALLLNGSMLHERPLKV 127
Score = 39.1 bits (87), Expect = 0.001
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 264 RKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 437
+ +++G +DY T L+ + G + V ++ D T KGF +I +S+ +V A
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 46.0 bits (104), Expect = 1e-05
Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Frame = +3
Query: 264 RKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 443
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 444 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 623
++ R++ + PRE +++ S+ + + E + +F I S
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSF-ETTESNKMSTPKKSFEQIKS 873
Query: 624 VSV-VTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ 731
S+ VT+ + F+ Y + RV L H+
Sbjct: 874 KSLGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHE 910
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
LFV L +D E L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 30.7 bits (66), Expect = 0.41
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 410
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 689
+FV + D+ E+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 34.3 bits (75), Expect = 0.034
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 410
+F+G + Y ++ + + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +3
Query: 276 IGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 455
+G L + T++ L F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 456 KIDGRIVEPKRAVPREEIKRPEAS 527
+ GR V A PR R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
Score = 39.5 bits (88), Expect = 9e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 549 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 695
V L D+ E DL ++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 695
L+V L E+ +R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 440
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 441 NNRPHKIDGRIVEPKRAVPREEI 509
+N + + G++++ K +P +++
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 40.7 bits (91), Expect = 4e-04
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +3
Query: 519 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 689
E+++ + +++ GL + +E+L Y + FG + S + D ET +G+GF F++
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Score = 39.5 bits (88), Expect = 9e-04
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 3/171 (1%)
Frame = +3
Query: 246 EAPEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--- 416
E+ TR ++I GL T+D +L + ++G++ + D +T KG+GF + +
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKS 349
Query: 417 AHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREY 596
A + A ++ + + + ++ E++ L+++ L E D+
Sbjct: 350 ALICISAMTLCGYQCS--FAKESFSARLQSLQDTEST----NLYISNLPLHWNESDISTL 403
Query: 597 FSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQIKDQHL 749
F I+S V+ D + + RG GF D + + + N+ + D L
Sbjct: 404 FKP-SKIISNRVLRDSKE-QSRGVGFARMQDRKTAEDIINKFNNFVLDPAL 452
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 689
++V + ++ EE + + F G + S +V D E+G+ +G+GF E+ D
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 33.1 bits (72), Expect = 0.078
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 446
+++G + Y + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 38.3 bits (85), Expect = 0.002
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 12/177 (6%)
Frame = +3
Query: 267 KLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 446
+LF+G + + T + F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 447 RPHK--IDGRI-VEPKRAVPREE--------IKRPEASATVKKLFVAGLKQDIEEEDLRE 593
K + RI VEP R R K P T +L V L +D+ +DL++
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 594 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNHQ-IKDQHLDVKK 761
G TD + G G VEF + + N + IK Q + +++
Sbjct: 117 VMRKAGE----PTFTDAHR-ENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLRE 168
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 35.1 bits (77), Expect = 0.019
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 246 EAPEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAH 422
+A + + +++G L + TT+ + + + GEI +++ D TK GF F+ Y
Sbjct: 26 DAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQD 85
Query: 423 MVDEAQNNRPHKIDGRIV 476
+D + +D RI+
Sbjct: 86 ALDSLKYISRTSLDERII 103
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.1 bits (77), Expect = 0.019
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 24/170 (14%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSL-KXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS----QAHMVDE 434
+F+G L T DS L F + ++ DP T S+ +GF+ +S Q H +
Sbjct: 184 IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMH 243
Query: 435 AQN----NRPHKIDGRIVEPKRAVPREEIKRPEASATVKK---------------LFVAG 557
Q RP +I + + ++ + ++T + +FV G
Sbjct: 244 MQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGG 303
Query: 558 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 707
L ++ E+DL+ F FG I+++ + K G GFV++ + ++
Sbjct: 304 LASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEK 347
Score = 31.5 bits (68), Expect = 0.24
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 443
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 516 PEASATVK--KLFVAGLKQDI--EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
P ++ T+ LFV L +I + L E FS FG I S ++ + T +G+GFV F
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
Score = 33.9 bits (74), Expect = 0.045
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 270 LFIGGLDYRTTDSS--LKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 443
LF+ LD ++ L+ + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 444 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 548
++G + KR KR + + +F
Sbjct: 481 T----LNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.034
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 540 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
K++++ L ++ E+ + E FG+++S ++ + G +GF F EF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.9 bits (74), Expect = 0.045
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 410
+++G L + T+D +L + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
Score = 31.5 bits (68), Expect = 0.24
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 689
++V L + +L + F+ G+++ + + TG+ +GFG V+F++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFEN 329
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.9 bits (74), Expect = 0.045
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +3
Query: 549 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQQNH 728
V L + E L F FG I+SV++ KE R + FVEFD+ + N+
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNY 68
Query: 729 QI 734
I
Sbjct: 69 SI 70
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 537 KKLFVAGLKQDIEEEDLR-EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
+++ + GL +I EE + ++T + +V+++ +KET K R F F +F
Sbjct: 71 QEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 516 PEASATVKKLFVAGLKQDIE--EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 683
P + L+V L + + L + FS FG+I+S + +G +G+GFV F
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 31.5 bits (68), Expect = 0.24
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +3
Query: 249 APEHTRKLFIGGLDYR--TTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAH 422
+P L++ LD T S L+ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 377 SPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIE 436
Query: 423 MVDEAQNNRPHKIDGRIVEPKR 488
A++ ++G +V KR
Sbjct: 437 AAVRAKDT----LNGMMVGKKR 454
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.5 bits (68), Expect = 0.24
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +3
Query: 270 LFIGGLDYRTTDSSL----KXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 437
LF+ L+ ++ L K +++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 438 QNNRPHKI-DGRIVEPKRAVPREEIK 512
+ + I DGR + +RA I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +3
Query: 252 PEHTRKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 431
PE ++F+ + T L+ ++ +GE+ D+ + +P T S G I++ + +
Sbjct: 90 PEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
Query: 432 EAQNN 446
A ++
Sbjct: 150 VAAHS 154
Score = 31.5 bits (68), Expect = 0.24
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 540 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 686
++FV+ + + E LR +F +FG + + + + TG G + FD
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.41
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 519 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 644
+ S + +F+ L I E+++RE FG I + +VT++
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 30.7 bits (66), Expect = 0.41
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 795 YPRQTCQFSILLFSHPNVDL*FGDFVASILCQLDHNHQTLQNQSPFSFLFLYLS 634
Y R F L F+H +L FG++ +++ LD H N PF+F + YLS
Sbjct: 176 YGRSNIPFHSLNFTHYIEELSFGEYYPALVNALD-GHYGHANDHPFAFQY-YLS 227
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.72
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 645 ETGKKRGFGFVEFDDYDPVDRVCLQQN-HQIKDQHLDVKKAISKTD 779
E + RGFGFV F + + R + N Q+ D L VK A+ + D
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 510 KRPEASATVKKLFVAGLKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFD 686
K ++ + L++ +++ I L+ FG+ V V ++T + RG FV FD
Sbjct: 17 KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76
Query: 687 DYDPVDRVCLQ-QNHQIKDQHLDVKKAISKTDM 782
+ + R Q + + + + ++ + SK+D+
Sbjct: 77 NLENASRALKDLQGYPLYGKPMMIQYSKSKSDI 109
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 2.9
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 264 RKLFIGGLDYRTTDSSLKXFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 443
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 444 NRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 542
+++ GR +E V R E K+P S K
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 3.9
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 543 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVCLQ- 719
LF+ L I E++ + F +G + + + +T RG FV +++ R C +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQT---RGTAFVVYENVQDARRACEKL 70
Query: 720 QNHQIKDQHLDV 755
+ D++L V
Sbjct: 71 SGYNFMDRYLVV 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,839,217
Number of Sequences: 5004
Number of extensions: 72156
Number of successful extensions: 290
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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