Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O17
         (1156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70284-19|CAL90888.1|  129|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z81058-3|CAB62800.1|  345|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>Z70284-19|CAL90888.1|  129|Caenorhabditis elegans Hypothetical
           protein K07F5.17 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 762 HRRRALSPTCEVSSESAPCSSRRAQSRADCTCCSRAGTCARS 887
           H +    PT +++S   PCSS      ++   CS+  T   S
Sbjct: 81  HLKSKDGPTTKITSSGTPCSSSSPAGNSETPLCSKESTIGSS 122


>Z81058-3|CAB62800.1|  345|Caenorhabditis elegans Hypothetical
           protein F11E6.3 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -2

Query: 936 QPAAREQCAQYARLKQVSARRYRHASNTCSLHGSALSCWSTAPTRY*PHTSATTPCVCEQ 757
           +P A+E+ A  A  +    R  R A N+     +A +   +AP    P   A  P   E+
Sbjct: 56  EPVAQEETAPEAPAQDAGYRSKRQAQNSYGDEAAAPAVEESAPAAEQPVEQAAEPVAQEE 115

Query: 756 IRQKAP 739
              +AP
Sbjct: 116 AAPEAP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,328,424
Number of Sequences: 27780
Number of extensions: 365566
Number of successful extensions: 1082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3140771858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)