Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O14
         (1159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    41   4e-04
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   1.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   6.5  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +2

Query: 443 RRAACICVRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLG 622
           R AA +   S  + +VLLV+S+++  +W+               A+RE  EE G++G + 
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGLVGHIT 101

Query: 623 RCLGVFENR 649
           R LG F+++
Sbjct: 102 RSLGSFKDK 110


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 773 LALHKPIQRHYLQQLRRSKQNKQDDQTTYN 862
           L +H+ +QRH+++ LR +   + D++  +N
Sbjct: 787 LEIHQRLQRHFVELLRPALSERNDEEAIFN 816


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 755 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 844
           DD LA L LH+ ++  +LQQ   SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 755 DDALAQLALHKPIQRHYLQQLRRSKQNKQD 844
           DD LA L LH+ ++  +LQQ   SK N QD
Sbjct: 553 DDKLAYLELHEALKLAFLQQYDFSK-NVQD 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,045,593
Number of Sequences: 5004
Number of extensions: 78812
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)