Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O14
         (1159 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       50   5e-06
06_01_1033 - 8080179-8080685                                           47   2e-05
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617...    40   0.004
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580...    37   0.026
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195...    33   0.57 
08_02_1015 - 23597445-23597628,23597654-23597877                       29   5.3  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
 Frame = +2

Query: 389 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 562
           +V  +   ++ Y   G R    CI   VRS  E EVL++TS ++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62

Query: 563 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKHRTE----VYVMTVTQELPEWEDSRLMG 730
               A RE LEEAGV G     LG +  +  ++ T     ++ + VT EL +W +  +  
Sbjct: 63  MDEAARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPE--MSS 120

Query: 731 RKRQWFSIDDAL 766
           RKR W ++  A+
Sbjct: 121 RKRTWATVQQAM 132


>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
 Frame = +2

Query: 389 MVKEKPNSIRIYDDE-GFRRRAACIC--VRSDAE-TEVLLVTSSRRP----DNWIXXXXX 544
           MV  +   ++ Y D  G R    CI   VR D    EVL+++S ++     D  +     
Sbjct: 5   MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64

Query: 545 XXXXXXXXXTAMREVLEEAGVIGKLGRCLG--VFENREHKHRTE--VYVMTVTQELPEWE 712
                     A RE LEEAGV+G++G  LG   + +R +    E  V+ + VT EL  W 
Sbjct: 65  WELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRWP 124

Query: 713 DSRLMGRKRQWFSIDDAL 766
           +  +  R+R W S   A+
Sbjct: 125 E--MAARRRSWVSPQQAM 140


>07_01_0793 -
           6169661-6169936,6170942-6171025,6171473-6171590,
           6172917-6172987
          Length = 182

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
 Frame = +2

Query: 575 AMREVLEEAGVIGKLGRCLGVFENREHKH----------RTEVYVMTVTQELPEWEDSRL 724
           A RE +EEAGV G L + LG ++ +   H          R  V+ + V +EL  W +   
Sbjct: 76  AAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFALRVKEELASWPEQST 135

Query: 725 MGRKRQWFSIDDAL 766
             RKR W ++ +A+
Sbjct: 136 --RKRTWLTLSEAV 147


>02_04_0020 -
           18956282-18956461,18956591-18956740,18957934-18958017,
           18958283-18958403,18958525-18958604
          Length = 204

 Score = 37.1 bits (82), Expect = 0.026
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
 Frame = +2

Query: 479 ETEVLLVTSSRRPDNWIXXXXXXXXXXXXXXTAMREVLEEAGVIGKLGRC-LG--VFENR 649
           + EVL+V++  R D  +               A RE +EEAGV G + R  LG  VF+++
Sbjct: 49  QVEVLMVSTPNRAD-MVFPKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSK 107

Query: 650 EHKHRTE--------VYVMTVTQELPEWEDSRLMGRKRQWFSIDDA 763
             ++ +         ++ M VT+EL  W +    GR+  W S  +A
Sbjct: 108 SSQNSSSPRGACKGYIFAMEVTEELESWPEQATHGRR--WVSPGEA 151


>08_02_1550 -
           27818271-27818618,27818743-27818955,27819079-27819597,
           27820239-27820357,27820457-27820763,27820840-27820922,
           27821027-27821204,27821328-27821401,27822078-27822293,
           27822724-27822757
          Length = 696

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 789 QSSVTTFNNCVVPNRTSKMTRLRTTFPVSDSKGWRRSTSPSANMDILHSRLPRL 950
           Q     F    +P + +  T   +  PVS S  WRR +S +     + S+ PR+
Sbjct: 40  QQPALKFRRASIPEKDTDATNASSVSPVSSSSSWRRDSSCTKGEGSMDSQEPRV 93


>08_02_1015 - 23597445-23597628,23597654-23597877
          Length = 135

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 744 GSPLMMPWLSSPFTSQSSVTTFNNCVV 824
           G P  MPW  +P TSQ S  T+ N ++
Sbjct: 54  GPPATMPWCPAPDTSQVSPNTWYNLIL 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,846,540
Number of Sequences: 37544
Number of extensions: 538682
Number of successful extensions: 1305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3526513192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)