Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O14
         (1159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical ...    87   2e-17
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   8.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   8.2  

>AC084268-2|AAL16324.1|  150|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.5 protein.
          Length = 150

 Score = 87.4 bits (207), Expect = 2e-17
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
 Frame = +2

Query: 386 KMVKEKPNSIRIYDDEGFRRRAACICVRSDA-ETEVLLVTSSRRPDNWIXXXXXXXXXXX 562
           K  + + N +R+ D +GFR RAA +C++    ET VLLV+  +    W+           
Sbjct: 6   KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGGIEKDEC 65

Query: 563 XXXTAMREVLEEAGVIGKLGRCLGVFENREHKHRTEVYVMTVTQELPEWEDSRLMGRKRQ 742
               A RE++EEAGV   + + +G+F++   KHRT+V++M V++EL  WE++   GR+R 
Sbjct: 66  AEEAAHRELMEEAGVRATILKKIGMFQDDVRKHRTQVFLMEVSEELQTWEENE-YGRQRI 124

Query: 743 WFSI 754
           W ++
Sbjct: 125 WMNV 128


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 723 SWDVRGNGSPLMMPWLSSPFTSQSSVTTF---NNCVVPNRTSKMTRLRT 860
           SW    NG  L++ WLS  F + S V  F   N+ +V N+  +MT+ RT
Sbjct: 102 SWFEVPNGVQLLIVWLSMTFAAASYVYVFESRNSTLVQNK-FRMTQRRT 149


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 240 FSTIKLHNVHKKS--NYNNNK 184
           ++T KL N+HKKS  N+NN+K
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSK 91


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 741  NGSPLMMP-WLSSPFTSQSSVTTFN-NCVVPNRTSKMTRLRTT 863
            +G P  +P W+ + +TSQSS + F+ +   P   +K T ++ T
Sbjct: 1288 SGKPATIPDWIMAMYTSQSSSSKFSKSTAFPTLITKQTEIKPT 1330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,012
Number of Sequences: 27780
Number of extensions: 456626
Number of successful extensions: 1023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)