Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O12
         (1204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    31   1.6  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    30   2.8  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    30   2.8  
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    30   3.7  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    30   3.7  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   5.0  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   5.0  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    29   6.6  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    29   6.6  
U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +2

Query: 704  KHTKPCQDVLHGIAPINTAVNSVTKPKPAGTDDGFKGEGAACGTSVVKVAHQMISSRSPR 883
            +H KP    L   A       SV    PAGT       G A G   +   + +   +   
Sbjct: 1672 QHNKPAASALSRFA-------SVKNTTPAGTPSSGGSSGGAIGKKSMSTTNLVDERQKTS 1724

Query: 884  GSTVASPSEDATAPDPQHY-----NLMAR 955
            G +VAS  + A+A   QH      NL+AR
Sbjct: 1725 GPSVASTGQAASAESLQHQTPSLENLLAR 1753


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 488 TLPVWMKTKPTKEFEPFAGSPPPPEDSFFYIRY-PKSDILFGKPTNSQDALVN 643
           T P+   +     +   A +PPPP    + I Y P  D+   K TN++  + N
Sbjct: 184 TTPIHWTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVEN 236


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 488 TLPVWMKTKPTKEFEPFAGSPPPPEDSFFYIRY-PKSDILFGKPTNSQDALVN 643
           T P+   +     +   A +PPPP    + I Y P  D+   K TN++  + N
Sbjct: 484 TTPIHWTSSSQNHYRTMAPAPPPPPGKNYQITYTPLDDLTDQKSTNTKSDVEN 536


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -2

Query: 855 CATFTTEVPHAA---PSPLKPSSVPAGFGFVTEFTAVLIGAMPWSTSWHGLVCF 703
           CA+   E  H     P+  +P+ + AGF +  E   +LI  +P      GL CF
Sbjct: 6   CASVDLEYVHVEDENPNENEPARLRAGFEWAAEPDEILIAGVPTKFIMFGLSCF 59


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +2

Query: 737  GIAPINTAVNSVTKPKPAGTDDGFKGEGAACGTSVVKVAH---QMISSRSPRGSTVASPS 907
            G  P N   +S+  P   G++DG    G+  G S   +AH   Q+ S  SP GS  +  +
Sbjct: 820  GSVPSNIPDSSLASPP--GSNDGSASFGSGRGPSDFGLAHALPQVPSIGSPPGSASSMVA 877

Query: 908  EDATAPDPQHYNL 946
              A  P   H N+
Sbjct: 878  HTAPGPLKSHRNV 890


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 539  AGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKP 718
            +GSP P E+   ++   +S      P  S+D++ +  ++ T  +      E + S    P
Sbjct: 5532 SGSPLPREEDDSHVI--ESHEYTSSPVPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVP 5589

Query: 719  CQDVLHGIAPINTAVNSVT 775
             +D +HG     T   +VT
Sbjct: 5590 SEDDVHGFVKTTTTTTTVT 5608


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +2

Query: 539  AGSPPPPEDSFFYIRYPKSDILFGKPTNSQDALVNETKEVTAASAFNVVKEKDWSKHTKP 718
            +GSP P E+   ++   +S      P  S+D++ +  ++ T  +      E + S    P
Sbjct: 5532 SGSPLPREEDDSHVI--ESHEYTSSPVPSEDSVKHVIEKTTTTTVTEERYEPEDSHSPVP 5589

Query: 719  CQDVLHGIAPINTAVNSVT 775
             +D +HG     T   +VT
Sbjct: 5590 SEDDVHGFVKTTTTTTTVT 5608


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 682 RQGERLVETHQAVPRCAPRHRANQHRSELCY 774
           RQ   LV +HQAV RC   +  N++R +L Y
Sbjct: 382 RQSNVLVISHQAVLRCILAYFTNKNRDDLPY 412


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 682 RQGERLVETHQAVPRCAPRHRANQHRSELCY 774
           RQ   LV +HQAV RC   +  N++R +L Y
Sbjct: 388 RQSNVLVISHQAVLRCILAYFTNKNRDDLPY 418


>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 778 FRNRVHCGVDWRDAVEHILARLGVF 704
           FRNR  CG+D    + +++ARL V+
Sbjct: 177 FRNRYVCGIDGGGPIGYVIARLVVY 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,309,921
Number of Sequences: 27780
Number of extensions: 436042
Number of successful extensions: 1500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3307723186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)