Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O11
         (1176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.033
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.95 
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   8.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 27/86 (31%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
 Frame = +2

Query: 401 GGGGGGFXXXKKXPPPXGXGXXXXGXXXXXXXXXXXXXGWGGG-XGXPPPXGGEKGXPXK 577
           GGG GGF      PPP   G    G             G+GGG  G     GG  G P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP-- 244

Query: 578 GGXXXKKNXXKRAPKGXXXXKGXXGG 655
           GG           P G     G  GG
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 31.1 bits (67), Expect = 0.31
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -3

Query: 862 GGVXGXPPXXPGXXGXXFFFFPGXXXGGXPGGFXGGXPXFFFXPXG 725
           GG  G PP  PG  G    F       G  GGF GG   F   P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 20/50 (40%), Positives = 20/50 (40%)
 Frame = -3

Query: 862 GGVXGXPPXXPGXXGXXFFFFPGXXXGGXPGGFXGGXPXFFFXPXGVSPP 713
           GG  G P    G  G  F   PG   GG  GGF GG   F   P G   P
Sbjct: 224 GGFGGGPGGFEGGPGG-FGGGPGGFGGGL-GGFGGGPGGFGGGPGGHGGP 271



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
 Frame = -3

Query: 946 GPPXGXRGGXXXXXXXXXXXXXXXXXPXGGVXGXPPXXPGXXGXXFFFFPGXXXG--GXP 773
           GPP G  G                    GG  G     PG  G     F G   G  G P
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258

Query: 772 GGFXGG 755
           GGF GG
Sbjct: 259 GGFGGG 264



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 559 FPPXGGGXPXPPPPXXGXXVFXGGGGGG 476
           F   GGG   PPP   G   F G GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.033
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +3

Query: 438 PPPPGXXGXXXXXPPPPPP 494
           PPPPG  G     PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +3

Query: 438 PPPPGXXGXXXXXPPPPPPXKTXXPXXGGGGXGXPPPXGGKRXXPK 575
           PPPP   G     PPPPPP     P    GG     P       PK
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 29.5 bits (63), Expect = 0.95
 Identities = 20/55 (36%), Positives = 20/55 (36%)
 Frame = -2

Query: 563 PFPPXXGGXTXXPPPXPXXXGFXXGGGGGXPXXXPPXPXGGGXFFXXXNPPPPPP 399
           P PP     T  P P P        GG   P   PP P   G       PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGA--GPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +3

Query: 432 KXPPPPGXXGXXXXXPPPPPPXKTXXPXXGGGGXGXPPP 548
           K PPPP          P P P     P  GG     PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -2

Query: 563 PFPPXXGGXTXXPPPXPXXXGFXXGGGGGXPXXXPPXPXGGGXFFXXXNPPPPP 402
           P  P  GG    PPP P   G   G G   P   PP    GG  +    P   P
Sbjct: 753 PPAPIMGG----PPPPPPPPGVA-GAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 439 PPPXGXGGXXXGXPPPPPXKKPXXXGXGGGXXVXP 543
           PPP        G  PPPP   P     GG     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 817 PXXPPGXXGGXPXPPP 864
           P  PPG  G  P PPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 473 PXXXPPXPXGGGXFFXXXNPPPPPPXXXKKKK 378
           P   PP P   G       PPPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 473 PXXXPPXPXGGGXFFXXXNPPPPPPXXXKKKK 378
           P   PP P     F     PPPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 423 PXKKXPPPPGXXGXXXXXPPPPPP 494
           P    PPPP   G      PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 423 PXKKXPPPPGXXGXXXXXPPPPPP 494
           P    PPPP         PPPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 2.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 438 PPPPGXXGXXXXXPPPPP 491
           PPPPG        PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 438 PPPPGXXGXXXXXPPPPPP 494
           PPPP         PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
 Frame = +3

Query: 441 PPPGXXGXXXXXPPPPPPXKT----XXPXXGGGGXGXPPPXGGKRXXPKKGGXP 590
           PP G        PPPPPP ++      P    G    PPP    R  P  G  P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP--PRSAPSTGRQP 376



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 442 PPXGXGGXXXGXPPPPPXKKPXXXG 516
           PP G G      PPPPP  +    G
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAG 349


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 799 PGXXXGGXPGGFXGGXP 749
           PG   GG PGG  GG P
Sbjct: 615 PGGAPGGMPGGAPGGAP 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.152    0.514 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,553
Number of Sequences: 5004
Number of extensions: 30923
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)