Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O09
         (1148 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.95 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   5.1  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   6.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.95
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 395 TNCIVPHDELENSDLDEKLTENDTEVSKGNHTSDLLLESDQAQEIEQKNDKDSAET 562
           T  +V  D  + S LDEKL  ND ++ K    S    ++     ++    ++S +T
Sbjct: 285 TPSVVVSDYSDYSYLDEKLERNDLDLEKYEGISSTPSQASSCSCLDCDEIRESLDT 340


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 931  RLNNNNSICXVYYNISGIMIDHFHS*YL 848
            RLN N ++C  Y++  G++     S YL
Sbjct: 968  RLNVNETVCSDYFSQGGVIESIMVSDYL 995


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 710 DKDECQQQENPEKVHKGSNIELN 778
           +K EC +  NP   H+ S+ +LN
Sbjct: 96  EKFECSKTSNPCLPHRNSDRDLN 118


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 807 LMNIAKLLYLSRKMRY*LWKW-SIMIPL 887
           L+++ +LL LSR +RY + +W  + IPL
Sbjct: 213 LLSLVRLLRLSRLVRY-VSQWEEVYIPL 239


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 608 RDSCLIK*YRPNCIYVFQLNLC 543
           R SC +      CIYV  +NLC
Sbjct: 173 RQSCPLILGSCKCIYVQSINLC 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 250,605
Number of Sequences: 438
Number of extensions: 5329
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38921823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)