Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O07
(1242 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.33
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.44
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 7.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 7.1
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.33
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +2
Query: 671 PTXPTXAXPXPFRGXXXDXR-PXPXXPXXXLXSPXPPXPSXRLXIPPNPXXPPP 829
P P A P P + P P P + SP P PS +PP P PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP-PSAPSLPSAVPPMPPKVPP 203
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Frame = +3
Query: 930 PXXPXPPXPXXXXXXPPXPXX----PPXXXPXXXPXXXXPXXXXPXXPPXXXXXPXP 1088
P PP P PP P PP P P P P PP P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 29.5 bits (63), Expect = 1.0
Identities = 38/185 (20%), Positives = 46/185 (24%), Gaps = 2/185 (1%)
Frame = +2
Query: 590 PRPXGISXXGXPXXSTMTXHIXXXVXXPTXPTXAXPXPFRGXXXDXRPX--PXXPXXXLX 763
P P S P S+ V P+ + P P G P P P +
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP-SGAPPVPAPSGIPPVPKPSVA 1100
Query: 764 SPXPPXPSXRLXIPPNPXXPPPXXXXSXXXXXXXXXXXXXXXXXXXXXXPXPXXPPXXXX 943
+P P PS + P P PP S P P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPS--VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 944 PXXPXXXXXXPPXXXXXXXXSPLXXXXXXXPPXXXPXXSPXXXXXXXPXXXXXXXXPXXX 1123
P P PP P+ PP P +P P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP---PVPKPSVGVPPVPPPST 1215
Query: 1124 PPPXP 1138
PP P
Sbjct: 1216 APPVP 1220
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Frame = +1
Query: 1036 PXXPPXXXPPPPXXXPXP--PXXXPXXP 1113
P PP PPPP P P P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 927 PPXXPXPPXPXXXXXXPPXPXXPPXXXPXXXPXXXXPXXXXP 1052
PP PP P PP P PP P P P P
Sbjct: 1709 PPPMSVPPPPSA----PPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/46 (30%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Frame = +3
Query: 927 PPXXPXPPXPXXXXXXPPXPXXPP-XXXPXXXPXXXXPXXXXPXXP 1061
PP P P PP P PP P P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 927 PPXXPXPPXPXXXXXXPPXPXXPP 998
PP P PP P P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Frame = +3
Query: 927 PPXXPX-PPXPXXXXXXPPXPXXPPXXXPXXXPXXXXP 1037
PP P PP P PP P P P P P
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = +1
Query: 883 PXPPXXXXPXXXXXXPXXXPPXXXXXXXXLPPXXXXXXXXFXPXXXXXXXXPXXPPXXXP 1062
P PP P P PP PP P P PP
Sbjct: 418 PTPPSLP-PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPA 475
Query: 1063 PPPXXXPXP 1089
PPP P P
Sbjct: 476 PPPAPAPAP 484
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 737 PXXPXXXLXSPXPPXPSXRLXIPPNPXXPPP 829
P P P PP P PP P PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,382
Number of Sequences: 5004
Number of extensions: 39768
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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