Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O06
         (1200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    33   0.45 
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     32   0.78 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    31   1.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.5  
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285...    29   7.3  

>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 25/86 (29%), Positives = 27/86 (31%)
 Frame = +3

Query: 459 LGXGXLGPPRGXNPK*GFXGXXGPQKRXPXGPXXPPPKXPKXXXG*X*XPXXXPPGGXLX 638
           L  G  GPPR   P+        P    P  P   PP+ P    G    P   PP   L 
Sbjct: 257 LPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPP---LA 313

Query: 639 GXXGXXXXXPPPKGGKXQXXXXGIPP 716
                    PP  GG       G PP
Sbjct: 314 NGPPRSIPPPPMTGGAMANFTPGAPP 339


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
 Frame = +3

Query: 393 PGXXXKPPXXTXGGXFKXPXXXLGXGXL-GPPRGXNPK*GFXGXXG----PQKRXPXGPX 557
           PG   +PP       F  P        L GPP G NPK G  G       P+   P  P 
Sbjct: 273 PGVICRPPPSPP--YFAPPPRATPTVSLAGPPPGFNPKRGLIGRGEAITLPESERPTPPP 330

Query: 558 XPPPKXP 578
            PPP  P
Sbjct: 331 PPPPLPP 337


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 31/116 (26%), Positives = 32/116 (27%)
 Frame = +2

Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXG 592
           PP NP G    P   P       PQG  P         AP      P  PP    Q   G
Sbjct: 23  PPMNPYGPP--PPQQPAYGHMPPPQGAPPPF------LAPPP-PPPPGPPPPHQPQFNFG 73

Query: 593 VXXXPXXXPPRWXPXGXKXGXXXPPPPQGXEKXKXGXGDSPXGKXK*XXPPIPXXP 760
                   PP   P         PPPP G    +      P        PP P  P
Sbjct: 74  PGPPQQQQPP--PPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPP 127


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = +2

Query: 530 PKKGSXXPXXPPXQXTQXXXGVXXXPXXXPPRWXPXGXKXGXXXPPPPQGXEKXKXGXGD 709
           P KG   P  PP             P   PP   P G K G   PPPP+G          
Sbjct: 340 PPKG---PPPPPPAKGPPPPPPPKGPSPPPP--PPPGGKKGGPPPPPPKGGASRPPAAPG 394

Query: 710 SPXG 721
            P G
Sbjct: 395 VPTG 398


>02_04_0028 +
           19027510-19027983,19028087-19028278,19028369-19028545,
           19029568-19029663,19030487-19030618,19030950-19031008,
           19031234-19031321,19031433-19031693
          Length = 492

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
 Frame = +2

Query: 527 APKKGSXXPXXPPXQXTQXXXGVXXXPXXXPPRWXPXGXKXGXXXPPPPQGXE--KXKXG 700
           A  +G      PP +  Q   G    P   PPRW P G          P G        G
Sbjct: 29  AAAEGGAVASQPP-RPPQPRPGTTRPPLWRPPRW-PWGSSSSAATAAAPGGASTAAAAQG 86

Query: 701 XGDSPXGKXK*XXPPIPXXPKK 766
            G +     +   PP+P  P +
Sbjct: 87  GGSAASRPPRPPRPPLPPRPPR 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,185,480
Number of Sequences: 37544
Number of extensions: 338225
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)