Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O06
(1200 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.40
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 32 0.70
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 2.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.5
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 29 8.6
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.1 bits (72), Expect = 0.40
Identities = 22/62 (35%), Positives = 23/62 (37%)
Frame = +3
Query: 393 PGXXXKPPXXTXGGXFKXPXXXLGXGXLGPPRGXNPK*GFXGXXGPQKRXPXGPXXPPPK 572
PG PP F P G G GPP P G G GP + P G PPP
Sbjct: 387 PGAFAPPP-----SAFGAPQGPGGPGGYGPPPPGGP--GAPGSYGPPQGGPGGFGPPPPG 439
Query: 573 XP 578
P
Sbjct: 440 GP 441
Score = 32.3 bits (70), Expect = 0.70
Identities = 29/101 (28%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Frame = +3
Query: 447 PXXXLGXGXLGPPRGXNPK*GFXGXXGPQKRXPXGPXX---PPPKXPKXXXG*X*XPXXX 617
P G GPP+G P+ G G PQ+ P PPP P
Sbjct: 327 PQQGFGAPPQGPPQGGPPQ-GSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSG 385
Query: 618 PPG---------GXLXGXXGXXXXXPPPKGGKXQXXXXGIP 713
PPG G G G PPP GG G P
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPP 426
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.70
Identities = 33/123 (26%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Frame = +2
Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXG 592
PP P+G P G S +G P KG+ P PP Q G
Sbjct: 189 PPPPPKGTGTPPPPPTGEPQDLSAEGYASR-----RPPPPPKGTGSPTPPPTGEPQDLSG 243
Query: 593 VXXXPXXXPPRWXPXGXKXGXXXPPPPQGXEKXKXGXGDS-----PXGKXK*XXPPIPXX 757
PP P G PPPP G + G G++ P K PP
Sbjct: 244 EGNASRRPPP--PPKGT---GSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPTGE 298
Query: 758 PKK 766
P+K
Sbjct: 299 PEK 301
Score = 30.3 bits (65), Expect = 2.8
Identities = 28/101 (27%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Frame = +2
Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPK-KGSXXPXXPPXQXTQXXX 589
PP P+G P G PQ G P KG+ P PP Q
Sbjct: 64 PPPPPKGTG-----TPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLS 118
Query: 590 GVXXXPXXXPPRWXPXGXKXGXXXPPPPQGXEKXKXGXGDS 712
G PP P G PPPP G + G G++
Sbjct: 119 GEGNASRRPPP--PPKGT---GSPPPPPTGEPQDLSGEGNA 154
Score = 29.1 bits (62), Expect = 6.5
Identities = 26/100 (26%), Positives = 31/100 (31%)
Frame = +2
Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXG 592
PP P+G P G PQ P KG+ P PP Q
Sbjct: 33 PPPPPKGTG-----TPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSA 87
Query: 593 VXXXPXXXPPRWXPXGXKXGXXXPPPPQGXEKXKXGXGDS 712
PP P G PPPP G + G G++
Sbjct: 88 EEGNASRRPPP-PPKGT---GTPPPPPTGEPQDLSGEGNA 123
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 507 GFXGXXGPQKRXPXGPXXPPPKXPKXXXG*X*XPXXXPPG 626
G G GP R P GP PP + P G P PPG
Sbjct: 245 GPPGPPGPPTRRPPGPPGPPTRRPPGPPG---PPTRRPPG 281
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 468 GXLGPPRGXNPK*GFXGXXGPQKRXPXGPXXPPPKXPKXXXG 593
G GPP P G GP R P GP PP + P G
Sbjct: 248 GPPGPPTRRPP-----GPPGPPTRRPPGPPGPPTRRPPGHQG 284
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 2.8
Identities = 30/113 (26%), Positives = 30/113 (26%), Gaps = 6/113 (5%)
Frame = +3
Query: 396 GXXXKPPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPX 557
G PP G F G GP P G P G F P P GP
Sbjct: 186 GPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPF 245
Query: 558 XPPPKXPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P P PP G G PP G G PP
Sbjct: 246 DPSGAPPSGGPPGPFNPSGAPPSGGPPGPF-DPSGAPPSGGPPGPFDPSGAPP 297
Score = 29.1 bits (62), Expect = 6.5
Identities = 29/108 (26%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Frame = +3
Query: 411 PPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPXXPPPK 572
PP G F G GP P G P G F P P GP P
Sbjct: 416 PPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 475
Query: 573 XPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P PP G G PP G G PP
Sbjct: 476 PPSGGPPGPFDPSGAPPSGGPPGPFN-PSGAPPSGGPPGPFDPSGAPP 522
Score = 28.7 bits (61), Expect = 8.6
Identities = 29/108 (26%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Frame = +3
Query: 411 PPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPXXPPPK 572
PP G F G GP P G P G F P P GP P
Sbjct: 251 PPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA 310
Query: 573 XPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P PP G G PP G G PP
Sbjct: 311 QPSGGPPGPFNPSGAPPSGGPPGPF-DPSGAPPSGGPPGPFNPSGAPP 357
Score = 28.7 bits (61), Expect = 8.6
Identities = 29/108 (26%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Frame = +3
Query: 411 PPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPXXPPPK 572
PP G F G GP P G P G F P P GP P
Sbjct: 326 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGA 385
Query: 573 XPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P PP G G PP G G PP
Sbjct: 386 PPSGGPPGPFDPSGAPPSGGPPGPFN-PSGAPPSGGPPGPFNPSGAPP 432
Score = 28.7 bits (61), Expect = 8.6
Identities = 29/108 (26%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Frame = +3
Query: 411 PPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPXXPPPK 572
PP G F G GP P G P G F P P GP P
Sbjct: 356 PPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGA 415
Query: 573 XPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P PP G G PP G G PP
Sbjct: 416 PPSGGPPGPFNPSGAPPSGGPPGPFN-PSGAPPSGGPPGPFNPSGAPP 462
Score = 28.7 bits (61), Expect = 8.6
Identities = 29/108 (26%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Frame = +3
Query: 411 PPXXTXGGXFKXPXXXLGXGXLGP--PRGXNPK*G----FXGXXGPQKRXPXGPXXPPPK 572
PP G F G GP P G P G F P P GP P
Sbjct: 386 PPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 445
Query: 573 XPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGGKXQXXXXGIPP 716
P P PP G G PP G G PP
Sbjct: 446 PPSGGPPGPFNPSGAPPSGGPPGPFN-PSGAPPSGGPPGPFDPSGAPP 492
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 516 GXXGPQKRXPXGPXXPPPKXPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGG 683
G P P PPP P P PP G L G PPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 516 GXXGPQKRXPXGPXXPPPKXPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGG 683
G P P PPP P P PP G L G PPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 516 GXXGPQKRXPXGPXXPPPKXPKXXXG*X*XPXXXPPGGXLXGXXGXXXXXPPPKGG 683
G P P PPP P P PP G L G PPP GG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.7
Identities = 26/97 (26%), Positives = 31/97 (31%)
Frame = +2
Query: 461 GXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXGVXXXPXXXPPRWXPXG 640
G G Q + G AP GS P PP + + G P P P
Sbjct: 209 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPP-KGSPPLAG-SGSPPPPPAAGSPPP 266
Query: 641 XKXGXXXPPPPQGXEKXKXGXGDSPXGKXK*XXPPIP 751
+ G PPPP G G P + PP P
Sbjct: 267 PRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 3.7
Identities = 26/97 (26%), Positives = 31/97 (31%)
Frame = +2
Query: 461 GXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXGVXXXPXXXPPRWXPXG 640
G G Q + G AP GS P PP + + G P P P
Sbjct: 230 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPP-KGSPPLAG-SGSPPPPPAAGSPPP 287
Query: 641 XKXGXXXPPPPQGXEKXKXGXGDSPXGKXK*XXPPIP 751
+ G PPPP G G P + PP P
Sbjct: 288 PRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 3.7
Identities = 26/97 (26%), Positives = 31/97 (31%)
Frame = +2
Query: 461 GXXXXGSPQGXKPXIGXXWXXXAPKKGSXXPXXPPXQXTQXXXGVXXXPXXXPPRWXPXG 640
G G Q + G AP GS P PP + + G P P P
Sbjct: 215 GGQQQGFGQQQQTQNGFRGKRQAPPAGSPPPPPPP-KGSPPLAG-SGSPPPPPAAGSPPP 272
Query: 641 XKXGXXXPPPPQGXEKXKXGXGDSPXGKXK*XXPPIP 751
+ G PPPP G G P + PP P
Sbjct: 273 PRTGSP-PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.5
Identities = 25/91 (27%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Frame = +2
Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPKKG----SXXPXXPPXQXTQ 580
PP P G P PG P P G P G P PP +
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPP-GMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357
Query: 581 XXXGVXXXPXXXPPRWXPXGXKXGXXXPPPP 673
G+ P P P G G PPPP
Sbjct: 358 AGPGMYPPPPPSRPPAPPSG--HGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.5
Identities = 25/91 (27%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Frame = +2
Query: 413 PPXNPRGXX*XPXXXPGXXXXGSPQGXKPXIGXXWXXXAPKKG----SXXPXXPPXQXTQ 580
PP P G P PG P P G P G P PP +
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPSRFGPP-GMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367
Query: 581 XXXGVXXXPXXXPPRWXPXGXKXGXXXPPPP 673
G+ P P P G G PPPP
Sbjct: 368 AGPGMYPPPPPSRPPAPPSG--HGMIPPPPP 396
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.7 bits (61), Expect = 8.6
Identities = 25/74 (33%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Frame = -3
Query: 685 FPPLGGGXXXXXPFXPXRXPPGGXXXGXXX-YPXXXLGXLGGGXXGPXGXLFWGPXXPXX 509
FPP G P P PPG G +P G G G G G G P
Sbjct: 269 FPP--GASAPVAPGMPGAFPPGQGGPGMPGSFPP---GAPGPGGPGMPGSFAPGAPGPGG 323
Query: 508 PYXGFXPLGGPXXP 467
P G P GGP P
Sbjct: 324 P--GGYPSGGPGMP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,663
Number of Sequences: 27780
Number of extensions: 232044
Number of successful extensions: 546
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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