Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O04
         (1217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   126   6e-30
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.24 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   7.0  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  126 bits (304), Expect = 6e-30
 Identities = 70/149 (46%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
 Frame = +3

Query: 150 RAIAVLSTETX-RGNITFTQV-QAGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCLSTG 320
           RA+AVL  ++   G +TF QV Q  +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 321 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 500
            HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 501 KADDYGKSDHPDSRKTGNAGGRVACGVIG 587
             DD GK    +S KTGNAG R ACGVIG
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIG 151


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 360  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 479
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 31  YILFXSPTEANXS-NKNACFNSHSWLXSLW 117
           YI+F +P E     N+NA   +  WL  +W
Sbjct: 654 YIIFSAPVEGVLLWNENAIMGTKRWLTKIW 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,528
Number of Sequences: 5004
Number of extensions: 45987
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)