Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_O04
(1217 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 171 7e-43
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 171 9e-43
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 163 3e-40
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 131 9e-31
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 51 2e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.15
03_06_0343 + 33274329-33274981,33275197-33276121 32 1.0
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804... 30 4.2
11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188 29 9.8
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 29 9.8
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 9.8
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 171 bits (417), Expect = 7e-43
Identities = 79/147 (53%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Frame = +3
Query: 150 RAIAVL-STETXRGNITFTQVQAGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 326
+A+AVL S+E +G I F+Q G V G ++GL PG +GFHVH GD + GC+STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 327 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 506
FNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 507 DDYGKSDHPDSRKTGNAGGRVACGVIG 587
DD GK H S+ TGNAGGRVACG+IG
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGIIG 149
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 171 bits (416), Expect = 9e-43
Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Frame = +3
Query: 141 TPSRAIAVL-STETXRGNITFTQVQAGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST 317
T +A+ VL S+E +G I F Q G V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 318 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLH 497
G H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H
Sbjct: 178 GPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 498 EKADDYGKSDHPDSRKTGNAGGRVACGVIG 587
DD GK H S+ TGNAGGRVACG+IG
Sbjct: 238 ADPDDLGKGGHELSKTTGNAGGRVACGIIG 267
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 163 bits (395), Expect = 3e-40
Identities = 76/147 (51%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Frame = +3
Query: 150 RAIAVLS-TETXRGNITFTQVQAGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 326
+A+AVL T G +T TQ G V +TGL PG +GFH+HE GD + GC+STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 327 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 506
FNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 507 DDYGKSDHPDSRKTGNAGGRVACGVIG 587
DD GK H S TGNAGGR+ACGV+G
Sbjct: 173 DDLGKGGHELSLSTGNAGGRLACGVVG 199
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 131 bits (317), Expect = 9e-31
Identities = 58/108 (53%), Positives = 75/108 (69%)
Frame = +3
Query: 198 FTQVQAGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRH 377
F G V+G +TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RH
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 89
Query: 378 VGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 521
VGDLGN+V +++ + I + D QISLSGPH I+GRAVV+H +DD G+
Sbjct: 90 VGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 50.8 bits (116), Expect = 2e-06
Identities = 34/121 (28%), Positives = 59/121 (48%)
Frame = +3
Query: 147 SRAIAVLSTETXRGNITFTQVQAGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 326
S A+A G + QV V+ +GL PG++G+ ++E GDL+ G STG
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
Query: 327 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 506
+NP D+ N+ +GDLG + E ++ +++ + +IGR++ L+
Sbjct: 225 YNP--SDYRS----NKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATE 275
Query: 507 D 509
D
Sbjct: 276 D 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.15
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 222 VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 320
+ V+ ++GL P +GFHVH G + GC+ G
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 82 CFNSH--SWLXSLWRRLIMASPRRPALLPFXPQKRLEATSHLLRFKLGR 222
C SH S++ SLW ++ P+ L P+K+ E L FK G+
Sbjct: 226 CVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGK 274
>06_03_0288 -
19179619-19179714,19180209-19180300,19180408-19180494,
19180802-19180963,19181032-19181183,19181526-19181872
Length = 311
Score = 29.9 bits (64), Expect = 4.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 561 RQRCRSSWSPDGHSCRNHQLSHGAP 487
RQ RS + DG CR H L HG P
Sbjct: 101 RQPPRSRFDGDGVGCRLHTLGHGGP 125
>11_06_0466 + 23903000-23904041,23905282-23905672,23905708-23906188
Length = 637
Score = 28.7 bits (61), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 204 QVQAGKVHVQGGITGLPPGEYGFHVHEKGDLS 299
+V AG+V G G+P ++GF +H GD S
Sbjct: 587 RVAAGEVEDGHGERGVPTCDHGFPLHSHGDCS 618
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 28.7 bits (61), Expect = 9.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 580 TPQATRPPALPVFLESGWSLLP*SSAFSWSTTALP 476
T A +P A+P + W+ P +A W T A P
Sbjct: 249 TDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAP 283
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 28.7 bits (61), Expect = 9.8
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = +2
Query: 377 RRRPWKRGL*R-----EPLQQDRLGRRPDLAIGSARHHRQSGG 490
RRRPW RG R P + GRRP G H +SGG
Sbjct: 47 RRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGG 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,527,591
Number of Sequences: 37544
Number of extensions: 393233
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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