Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_O02
         (1151 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   7.6  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -1

Query: 455 FLIHISSRFHSTNAPPNPVVSSLSFTQPRASTEPSF--------TAGMNFKRNGKCVMSH 300
           F   I ++ H TN   N  +  LS T    + +PS+         A    +   +     
Sbjct: 103 FRTKILAQVHGTNNGTNKNMRRLSTTTQNKNDDPSYWEKRRKNNEAAKRSRDARRAKEDE 162

Query: 299 ISILESFLARDNC 261
           I+I  +FL R+NC
Sbjct: 163 IAIRCAFLERENC 175


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 987 PLXICRVRLXLIFLNCIMVGSTPLQNKLFLSSDTAIVKMSAL 862
           P  IC     LIF+N   V S P    L LS    +++ S L
Sbjct: 196 PSAICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWL 237


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 987 PLXICRVRLXLIFLNCIMVGSTPLQNKLFLSSDTAIVKMSAL 862
           P  IC     L+F+N   V S P    L LS    +++ S L
Sbjct: 196 PSAICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWL 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,404
Number of Sequences: 336
Number of extensions: 5489
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33506525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)